Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu08g01674 ATGATGATGAATCCTGTTTTTGTTCGGCGAGGTTTGAATGCTGCTGCTGGTTTCATCGTACCCGGTTCTATGGTAGACAATACTTTTGTCCTTGATTCCTTTGTCGCCGCAGCCGCCAATAATACTCCTCGTCGTCGTCCCCAGAACAACAACAATAGCAACTTGTTCTCTTCACAGGTAGCAACAAGAAGGGATGTAGGTCCAAATCTTCTTAATGGAAGAGGAAGAGGCAGAATCATAGATGATACTATTTTTCTCTTCGATAATAATTCTTATTCTTATGTCGCCAACAACACCATGGGGAGTCACAACAATGCTCCATTCAATCGTTCTCCTCAATATGATTTCATCAATGTTGATGAAACTTCAAAAACAGATAATGATGGACTCTGCTCTATATGTCTCTGTGACCATGATTCCAACGCAGTTCAGTTGCGTGGCTGTTCTCATGTATTCCACAAAGATTGTATCGAAAAGTGGATTAGTGTGAGAAGAACTTGTCCTCTCTGTCGAAGTGACATTTAG 525 0.4133 MMMNPVFVRRGLNAAAGFIVPGSMVDNTFVLDSFVAAAANNTPRRRPQNNNNSNLFSSQVATRRDVGPNLLNGRGRGRIIDDTIFLFDNNSYSYVANNTMGSHNNAPFNRSPQYDFINVDETSKTDNDGLCSICLCDHDSNAVQLRGCSHVFHKDCIEKWISVRRTCPLCRSDI 174
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu08g01674 174 PANTHER RING FINGER AND PROTEASE ASSOCIATED DOMAIN-CONTAINING 35 171 - -
Tsu08g01674 174 PANTHER RING FINGER PROTEIN 215 35 171 - -
Tsu08g01674 174 Pfam Ring finger domain 131 171 IPR001841 -
Tsu08g01674 174 SUPERFAMILY RING/U-box 124 174 - -
Tsu08g01674 174 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 108 174 IPR013083 -
Tsu08g01674 174 ProSiteProfiles Zinc finger RING-type profile. 131 171 IPR001841 -
Tsu08g01674 174 SMART ringv_2 130 171 IPR011016 GO:0008270
Tsu08g01674 174 SMART ring_2 131 170 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu08g01674 Tsu-Chr8 20008408 20009074 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu08g01674 102 174 C3H Transcription Factor Family AT1G80400 35.065 9.32e-11 57.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu08g01674 K19041 - lgi:LOTGIDRAFT_88425 65.0846