Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu08g01651 ATGAGAAACGAGAATGTTGCACTCGTTGTATTCTCACCTAGTGGGAAGACATTCTCCTATGGTCATCCCAATGTTGATACAATCATTGATCGCTATCTCTCTCAGGTCCCATCCCAAAACACGCTAGACGATGTGAAGAAGCATGGTGATGAGCTGAGGCATTTGCACAAGGAGATCAAGGCTTTATTTTGTTGGGCTTGTCCAATTGGTGGGATGAATAGGGTTGAACTTGAATTCCTAAAGAAGCCTTTGAAGGAGCTTAAGTTTCTTGTTGCACAACATGTTATTGGAATTGCAATTCAGGACGTGCCTAGTCAAACTCTCCCATTTTTGGTTGGCAATGCTTCATCCTCTGACATCCCCCTCTATATGTCAAATCCTCAACAGGCTCAAACGTTTCTACCACAACTTCCTCAAAATCCTATGTTGCAATCTTGCAATCTAATTTGTTTGGCTACAACAATATAG 468 0.4188 MRNENVALVVFSPSGKTFSYGHPNVDTIIDRYLSQVPSQNTLDDVKKHGDELRHLHKEIKALFCWACPIGGMNRVELEFLKKPLKELKFLVAQHVIGIAIQDVPSQTLPFLVGNASSSDIPLYMSNPQQAQTFLPQLPQNPMLQSCNLICLATTI 155
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu08g01651 155 SUPERFAMILY SRF-like 5 50 IPR036879 GO:0003677|GO:0046983
Tsu08g01651 155 Gene3D - 3 47 IPR036879 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu08g01651 Tsu-Chr8 19655794 19656355 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu08g01651 6 118 Type I MADS-box Gene Family AT5G60440 33.103 8.21e-13 62.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu08g01651 - - mtr:MTR_7g062350 139.043