Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu08g01620 ATGGCGAAAAAAGCTGTGTTGATTGGGATCAATTATCCTGGAACAAAAGCAGAGTTAAAAGGATGTGTAAACGACGTTTGGAGGATGCACAAATGCTTGATCGAACGATACGGTTTTTCTGAAAATGATATAACCGTTTTGATCGACACAGATTCGTCGTACAAGGAGCCAACAGGCAAGAACATACGAAGTGCGCTGTCGAATTTGGTTGGATCGGCGGAGGAAGGAGATGTGTTGTTCGTTCATTACAGTGGACATGGAACACGTCTTCCGGCTGAAACTGGAGAAGATGATGATACTGGTTATGATGAATGTATCGTTCCTTCTGATATGAATCTCATCACTGATGATGATTTCAAGGAATTTGTGGATGGGGTTCCTAGAGGATGTAGGCTGACAATTGTATCTGATTCATGTCATAGTGGTGGCTTGATTGAAGAAGTTAAGGAGCAGATAGGAGAGAGCACAAAGGGAGAAGACGAACATTCTGGATCCGGTTTTGGATTGTCAAATTTTCTGCATAGGAAAGTGGAAGATGCTGTTGAGTCCAGGGGGTTTCATGTCCCTTCAGGATTGCGCAGTCATCATGGACGCAGGGATGACGAAGAAAATGAAGATAGGGATCTCCCACATGGAGTTAAGAATAGGTCTCTACCGCTTTCAACCCTCATTGATATACTTAAGCAGAAAACTGGGAAAGAAGATATAAATGTTGGTCAACTGAGGCCTACACTTTTCGATGTTTTTGGGGAAGATTCTAGCCCAAAAGTGAAGAAGTTTATGAACGTTATCTTTAGCAAACTCCAACATGGAGGTGGTGAAGGTGAACAAGGTGGGATACTTGGAATGGTGGGTAGTCTTGCTCAAGAGTTTCTCAAGCAAAAGCTGGATGGTAATGATGAGGGATATGCAAAACCTGCCATGGAGACAAAAGTCGGAAATAAGCACGAAGCGTATGCTGGATCAACAAGGCGCACTCTTCCAAGTGGTGGGATTCTAATGAGCGGTTGTCAGACAGACCAGACTTCAGCAGATGCTTGTCCTTCAGGAAATCCAGCTAATGCTTATGGAGCTTTCAGCAATGCAATACAGGCTATAATTGACGAGTCTGATGGTGGAATTACATATTCAGAGCTTGTTCACAAGGCTAGGCAGAAGCTACAGAAGGATGGTTTCACTCAAAAGCCTGGACTCTATTGCAGTGATCACCATGTTGATGAACCTTTCGTGTGCTGA 1236 0.4361 MAKKAVLIGINYPGTKAELKGCVNDVWRMHKCLIERYGFSENDITVLIDTDSSYKEPTGKNIRSALSNLVGSAEEGDVLFVHYSGHGTRLPAETGEDDDTGYDECIVPSDMNLITDDDFKEFVDGVPRGCRLTIVSDSCHSGGLIEEVKEQIGESTKGEDEHSGSGFGLSNFLHRKVEDAVESRGFHVPSGLRSHHGRRDDEENEDRDLPHGVKNRSLPLSTLIDILKQKTGKEDINVGQLRPTLFDVFGEDSSPKVKKFMNVIFSKLQHGGGEGEQGGILGMVGSLAQEFLKQKLDGNDEGYAKPAMETKVGNKHEAYAGSTRRTLPSGGILMSGCQTDQTSADACPSGNPANAYGAFSNAIQAIIDESDGGITYSELVHKARQKLQKDGFTQKPGLYCSDHHVDEPFVC 411
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu08g01620 411 PANTHER METACASPASE-4 1 411 - -
Tsu08g01620 411 Gene3D - 298 410 - -
Tsu08g01620 411 Gene3D - 1 183 - -
Tsu08g01620 411 MobiDBLite consensus disorder prediction 184 214 - -
Tsu08g01620 411 Pfam Caspase domain 3 402 - -
Tsu08g01620 411 MobiDBLite consensus disorder prediction 193 213 - -
Tsu08g01620 411 PANTHER METACASPASE-5 1 411 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu08g01620 Tsu-Chr8 19223221 19225476 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu08g01620 - - gmx:100802658 681.404
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu08g01620 08 19223221 19225476 Tsu08g01620 08 19223221 19225476 ECH