Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu08g01615 ATGGCATCAAAGCCTATCAAAATGCCTGATTTACCTCATACAACTATGAGTAACAACAATGTATCAGAAGAAGCTCACAAAACAGATCAAAGTTGTGCAAATGAAAATACAGAAAATGATGATATTAGAAAGGTGAATAATCAAGAAACAAAAGATGgtttcaaaaatgaaaacaatgcaaagaaaacaacaaataagCCAGCAAAATCACCATCATTTACATCATTTAGGCCTGAAAAGTTAGAAACACACATGAGGAATTTCTCTGAAGTTTCTACTCCTTCTAAAGCAAGATCAAGTCAAAGAATGATTTCAAAGAGCAGTCCGAATTCGCGTAGTGATAGTTTAGAAAGCACAAGTACACCAATATTTAAGCCACATACCGGAGGCGATGTGAGATGGGATGCAATCAACTTAGTTACAAGAGGGTCACATTGTAATCTCAACTTTGGTCATTTTCGGCTTTTGAAACGCGTCGGTTATGGTGACATCGGAAGTGTTTATCTTGTTGAACTTAAAGGGACAAGAACATTTTATGCTATGAAAGTAATGGATAAGGCTTCACTTGCTAGTAGAAACAAACTTCTTAGAGCACAAACTGAAAGAGAGATTCTTGGACTTCTTGATCACCCTTTCTTGCCAACTTTGTATTCtcattttgaaaatgaaaagtatTATTGTTTGGTCATGGAGTTTTGTAGCTGTGGTAGTTTGCATAACCTCAGAATGAAGCAACCCAACAAGCATTTCACTGAAAATGCTGCAAGGTTTTATTGTTCAGAGATTCTATTAGCATTGGAGTACCTCCACATGTTAGGAATAGTATACAGAGATTTAAAACCAGAAAATGTTCTAGTCCGTGACGAAGGCCACATAATGCTATCGGATTTCGACTTATCCCTTCGATGTTCAGTTAACCCTACACTCGTCAAGTCCTCCTCGGCACACATAACCACCACCGCCACATCCATTGGAATCCTTGATGACGATCACACCGTACAAGGTTGTATGCAACCATCAAATTACTTGTTTCCAAAAATCCTCCCTAAAAAAAACCGAAAATCAAAATCAGATTTCGGTCTCATCCGTCTTCCAGAATTAATGGCAGAACCAACAAACGTCCGATCAATGTCATTCGTTGGGACACACGAATATCTTGCACCAGAAATCGTGCGTGGTGAAGGACACGGTAGTGCTGTTGATTGGTGGACATTTGGGATATTTTTATACGAGCTTTTAACCGGAACTACACCGTTTAAAGGTAACGGAAACCGTGCTACACTTTTCAATGTTGTAGGACAACCTTTAAGGTTTCCTGATCATCCTTCATGTAGTCCTGTTGCTAGGGATCTTATTAGAGGATTGTTGGTTAAAGAACCTCAAAAAAGATTTGCTTATACAAGAGGTGCTACTGAGATTAAACAACACCCGTTTTTCGAAGGGGTTAATTGGGCATTGATTCGAAGTGCTACTCCTCCTATTATACCAGAACCATTTGATTTTAGTCAGTATGTTAGTAAGGAAACTATTGTTGCTGCTGTTGCTGATAAGAAGATTGTTGATATTGTGAGtgataaaaataatagtaagGTGCAACATGATTCTTCTAATGAAGATTTTGAGTATTTTTAG 1632 0.367 MASKPIKMPDLPHTTMSNNNVSEEAHKTDQSCANENTENDDIRKVNNQETKDGFKNENNAKKTTNKPAKSPSFTSFRPEKLETHMRNFSEVSTPSKARSSQRMISKSSPNSRSDSLESTSTPIFKPHTGGDVRWDAINLVTRGSHCNLNFGHFRLLKRVGYGDIGSVYLVELKGTRTFYAMKVMDKASLASRNKLLRAQTEREILGLLDHPFLPTLYSHFENEKYYCLVMEFCSCGSLHNLRMKQPNKHFTENAARFYCSEILLALEYLHMLGIVYRDLKPENVLVRDEGHIMLSDFDLSLRCSVNPTLVKSSSAHITTTATSIGILDDDHTVQGCMQPSNYLFPKILPKKNRKSKSDFGLIRLPELMAEPTNVRSMSFVGTHEYLAPEIVRGEGHGSAVDWWTFGIFLYELLTGTTPFKGNGNRATLFNVVGQPLRFPDHPSCSPVARDLIRGLLVKEPQKRFAYTRGATEIKQHPFFEGVNWALIRSATPPIIPEPFDFSQYVSKETIVAAVADKKIVDIVSDKNNSKVQHDSSNEDFEYF 543
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu08g01615 543 ProSiteProfiles Protein kinase domain profile. 153 479 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu08g01615 543 ProSitePatterns Serine/Threonine protein kinases active-site signature. 274 286 IPR008271 GO:0004672|GO:0006468
Tsu08g01615 543 MobiDBLite consensus disorder prediction 12 27 - -
Tsu08g01615 543 CDD STKc_phototropin_like 152 498 - -
Tsu08g01615 543 PANTHER FLIPPASE KINASE 1-RELATED 18 543 - -
Tsu08g01615 543 Pfam Protein kinase domain 357 479 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu08g01615 543 Pfam Protein kinase domain 154 307 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu08g01615 543 MobiDBLite consensus disorder prediction 87 124 - -
Tsu08g01615 543 MobiDBLite consensus disorder prediction 28 59 - -
Tsu08g01615 543 SUPERFAMILY Protein kinase-like (PK-like) 150 508 IPR011009 -
Tsu08g01615 543 Gene3D Phosphorylase Kinase; domain 1 147 240 - -
Tsu08g01615 543 SMART serkin_6 153 479 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu08g01615 543 PANTHER SERINE/THREONINE-PROTEIN KINASE AGC1-5 18 543 - -
Tsu08g01615 543 MobiDBLite consensus disorder prediction 1 124 - -
Tsu08g01615 543 Gene3D Transferase(Phosphotransferase) domain 1 241 496 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu08g01615 Tsu-Chr8 19180169 19183476 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu08g01615 116 516 AGC Kinase Gene Family AT1G79250 74.390 0.0 629
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK AGC_RSK-2 Tsu08g01615 Pkinase 5.8e-37 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu08g01615 - - gmx:100802478 687.567
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu08g01615 08 19180169 19183476 Tsu08g01615 08 19180169 19183476 ECH