Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu08g01614 ATGGAAAATCGAATCTACACTTCATATAGCCCAACTGGAGCAACAACAGCATCATCAACAATATCCCCGACCCGATTTTACGACCCGAATACAATGTTCCTTGCTCATTATCGCCGCACCGCTGAAGCTGCCGCCGCTGCTTCCGCTATCCGTtactcttcttctctttctgaTATTGACATTGGTCCACCTGGAGTTGGTTCTAGAATCTCCTCTTCTTCCACTGCTAATTTCCTGTCGCAAACTAATCCTTGGGCTAACGCTTTCAACAACACCGCCGTAAATGTTGCCTCTGAACTTAAACGCTCTTCTGACGCGCTCTACCATCCAACCATTTTGAATACAATTGGGCAAAACGAAGCTTGGTATACTACAAACTCATTGGCCAAGCGCCCTAGATATGAAACCGGAAGCACTTTGCCTATTTATCCACAGAGGCCAGGAGAGAAGGATTGTGCCCACTATATGCTAACAAGAACCTGTAAATTTGGAGAGAGCTGCAAGTTTGATCATCCTATTTGGGTTCCTGAGGGTGGAATTCCAGATTGGAAAGAGGTTCCAAATATTGTTCCAAGTGAAACTCTTCCTGAAAGACCTGGAGAACCAGATTGTCCGTTCTTTCTGAAAACTCAAAAATGCAAGTTTGGTTCAAGGTGCAAATTTAATCATCCAAATGTTCCCACGGAAAATCCTGATGTTTCTGGCTTACCCGAGAGGCCACAAGAGCCCCATTGTGCGTTCTATTTGAAAACTGGAAAATGTAAATATGGTGCTGCGTGCAAATTCCATCACCCCAAGGATATCCAGATTCAGTTCTCTGATGAATCAAGCCATACCGTTGAGCAGACACAAACAAATTCTTCTATGTTTGACGGGGCGATAGGCGATGCACAACAAACTAAGCCTCTTATATCTCCACTGTTGCATAATAGCAAAGGGCTTCCTGTGAGACTGGGAGAAGTGGATTGTCCGTTCTACATGAAAACTGGAAGTTGCAAGTTCGGTGCCAGTTGTCGCTACAATCATCCTGACATGAATGCAATTAATCCAACTATTTCTGCATTGGCCCCTTCTCTTTTGGGATCCTCGGCTGCTAATCATAACATTGGAGTTATTAATCCAGCTGCATCTTTTTATCAAGCTTTTGACCCCAGGATCTCAAATCCAATGACCCAGGTGGGAGTAACAGGGACCATCTATCCTCAGCGTCCTGGACAGATTGAATGTGATTTCTATATGAAATCCGGCATATGTAAATTTGGGGAAAGATGCAAGTATCATCACCCAATCGACCGCTCAACAGCATCACTGTCAAAACTGCAATCAAATGTTAAACTTACGGCTGCAGGGTTACCAAGAAGAGAGGGTGTTGAGATTTGCCCATATTATTTGAAAACTGCCACGTGCAAGTTTGGCGCGACATGCAAGTTTGATCATCCACCACCAGGAGAAGTGATGGAGTTGGCCAAGTCACAAGGAACTTCTACAACCAATGGAGGAGAAACAGAGACCAACGAAAATGTGTCTGGTTCTGCTCCGGAATAA 1545 0.4395 MENRIYTSYSPTGATTASSTISPTRFYDPNTMFLAHYRRTAEAAAAASAIRYSSSLSDIDIGPPGVGSRISSSSTANFLSQTNPWANAFNNTAVNVASELKRSSDALYHPTILNTIGQNEAWYTTNSLAKRPRYETGSTLPIYPQRPGEKDCAHYMLTRTCKFGESCKFDHPIWVPEGGIPDWKEVPNIVPSETLPERPGEPDCPFFLKTQKCKFGSRCKFNHPNVPTENPDVSGLPERPQEPHCAFYLKTGKCKYGAACKFHHPKDIQIQFSDESSHTVEQTQTNSSMFDGAIGDAQQTKPLISPLLHNSKGLPVRLGEVDCPFYMKTGSCKFGASCRYNHPDMNAINPTISALAPSLLGSSAANHNIGVINPAASFYQAFDPRISNPMTQVGVTGTIYPQRPGQIECDFYMKSGICKFGERCKYHHPIDRSTASLSKLQSNVKLTAAGLPRREGVEICPYYLKTATCKFGATCKFDHPPPGEVMELAKSQGTSTTNGGETETNENVSGSAPE 514
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu08g01614 514 ProSiteProfiles Zinc finger C3H1-type profile. 454 482 IPR000571 GO:0046872
Tsu08g01614 514 ProSiteProfiles Zinc finger C3H1-type profile. 198 226 IPR000571 GO:0046872
Tsu08g01614 514 MobiDBLite consensus disorder prediction 489 514 - -
Tsu08g01614 514 MobiDBLite consensus disorder prediction 487 514 - -
Tsu08g01614 514 Gene3D - 197 273 - -
Tsu08g01614 514 Gene3D - 402 496 - -
Tsu08g01614 514 SUPERFAMILY CCCH zinc finger 405 431 IPR036855 GO:0046872
Tsu08g01614 514 ProSiteProfiles Zinc finger C3H1-type profile. 146 174 IPR000571 GO:0046872
Tsu08g01614 514 Gene3D - 103 185 - -
Tsu08g01614 514 Gene3D - 283 352 - -
Tsu08g01614 514 ProSiteProfiles Zinc finger C3H1-type profile. 403 431 IPR000571 GO:0046872
Tsu08g01614 514 ProSiteProfiles Zinc finger C3H1-type profile. 317 345 IPR000571 GO:0046872
Tsu08g01614 514 PANTHER CCCH ZINC FINGER/TIS11-RELATED 85 494 IPR045877 GO:0003729
Tsu08g01614 514 SUPERFAMILY CCCH zinc finger 203 224 IPR036855 GO:0046872
Tsu08g01614 514 SUPERFAMILY CCCH zinc finger 321 344 IPR036855 GO:0046872
Tsu08g01614 514 SUPERFAMILY CCCH zinc finger 241 267 IPR036855 GO:0046872
Tsu08g01614 514 SMART c3hfinal6 403 430 IPR000571 GO:0046872
Tsu08g01614 514 SMART c3hfinal6 198 225 IPR000571 GO:0046872
Tsu08g01614 514 SMART c3hfinal6 146 173 IPR000571 GO:0046872
Tsu08g01614 514 SMART c3hfinal6 239 266 IPR000571 GO:0046872
Tsu08g01614 514 SMART c3hfinal6 454 481 IPR000571 GO:0046872
Tsu08g01614 514 SMART c3hfinal6 317 344 IPR000571 GO:0046872
Tsu08g01614 514 ProSiteProfiles Zinc finger C3H1-type profile. 239 267 IPR000571 GO:0046872
Tsu08g01614 514 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 406 429 IPR000571 GO:0046872
Tsu08g01614 514 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 320 343 IPR000571 GO:0046872
Tsu08g01614 514 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 148 172 IPR000571 GO:0046872
Tsu08g01614 514 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 456 481 IPR000571 GO:0046872
Tsu08g01614 514 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 200 224 IPR000571 GO:0046872
Tsu08g01614 514 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 242 266 IPR000571 GO:0046872
Tsu08g01614 514 SUPERFAMILY CCCH zinc finger 147 173 IPR036855 GO:0046872
Tsu08g01614 514 SUPERFAMILY CCCH zinc finger 457 481 IPR036855 GO:0046872
Tsu08g01614 514 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 37 85 494 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu08g01614 Tsu-Chr8 19163419 19169912 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu08g01614 440 503 C2H2 Transcription Factor Family AT3G02830 35.385 6.07e-06 46.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Tsu08g01614 zf-CCCH 2.1e-09 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu08g01614 - - cam:101499264 862.062
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu08g01614 08 19163419 19169912 Tsu08g01614 08 19163419 19169912 ECH