Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu08g01612 ATGGATTATGCAGGTAGAAACGGCGTGTATGGCTTAGCCTCCGTTCTTAACGATAATCTTCATGCCAAACTTTGGCATAAATGTCTGGGTTCGCTATACATCCCTAAGATTGGCGATAAGGTTGTCTACTATCCCCAAGGCTATATGGAGCAGGTCGGAATAGACCATCAACAAGATCCCAACTTTGAAATTCTTAATTTGGAGTTGCCATCTAAAATTTTATGTGTCGTTATTGCTGTTCAGTTGAAGGTACATGTTAACACAGATGAGGTTTTCGCTCTAGTTACACTAATCCCATCGGAGCAACAAGGGTTTATGGAAGAGGACAATCATCCACAAGATGATAGTCCTAGTCAAATATACACTTTTGCAAAGATGCTGGAAACAAGTACACAAGCTGATAGACTTTATATTCCAAAGGAACATGCAGAAAGATGCTTCCCTAGACtgGACCTGACTGGTCAACCACCAATGCAAGATTTAGTGGTGAAGGACTTGCATGGAATTGAGTGGAATTTTCGACATATTTATTGTGATCAACAAAAAGCTCACTACCTTACAAATGGTTGGAGCACGTTCGTAAATTCTAAAAAACTTGCTCCTGGAGATTCATGCATTTTTGCTAGGGGAGAGAATGGTGAAATCGGTATTGGGATTCGTCGAGCAATGAAACAACATAGTGATATATGGAAAACATCATCTCCCCTTGGATCAATGTGTGCTGCTTCTCATGCTGTTTCTGCAAGAACTATGTTCCTTGTCCAATACTACCCTTGGACTGCTCCCTTTGAGTTTATGATCCCTTTGAAAACTTATGTTGAGTCCATTGAAAGAGACTATCCCATTGGAACGAGGGTTCAAATGTTGTACCAATTTCAAGAATTTGCAAAAAGATATGGTACAATTGTTGGTAATGAAGATATTGATCCCATTAGGTGGCCTGGATCTGAATGGAGATGTATTAAGGTGCAATGGGATTCCAAACCACCAAATACTTTTACACAACCTGAAAGGGTTTGTCCTTGGTGGATTGAACCTTTGGGATCTCCAAAGATTAAGGGCTTTCATGTTCTGCCTTCATCGAATGATGTTATTGGGAGTTCATCCATGCCTCAATATCACGTTGTGGACATGGACATGCAAGGTCGCTGCTGGCGAGCCTTGGTCGCTGCTGGCGACCACCATTCTGATTTTGAACTTTGTTACTTTggttttgctcctctttttGTCATGAAAGCTTATCAAAAAAGTTAG 1254 0.4019 MDYAGRNGVYGLASVLNDNLHAKLWHKCLGSLYIPKIGDKVVYYPQGYMEQVGIDHQQDPNFEILNLELPSKILCVVIAVQLKVHVNTDEVFALVTLIPSEQQGFMEEDNHPQDDSPSQIYTFAKMLETSTQADRLYIPKEHAERCFPRLDLTGQPPMQDLVVKDLHGIEWNFRHIYCDQQKAHYLTNGWSTFVNSKKLAPGDSCIFARGENGEIGIGIRRAMKQHSDIWKTSSPLGSMCAASHAVSARTMFLVQYYPWTAPFEFMIPLKTYVESIERDYPIGTRVQMLYQFQEFAKRYGTIVGNEDIDPIRWPGSEWRCIKVQWDSKPPNTFTQPERVCPWWIEPLGSPKIKGFHVLPSSNDVIGSSSMPQYHVVDMDMQGRCWRALVAAGDHHSDFELCYFGFAPLFVMKAYQKS 417
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu08g01612 417 Pfam Auxin response factor 242 322 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Tsu08g01612 417 Gene3D - 280 351 - -
Tsu08g01612 417 PANTHER AUXIN RESPONSE FACTOR 13 349 - -
Tsu08g01612 417 SMART B3_2 122 223 IPR003340 GO:0003677
Tsu08g01612 417 Gene3D - 120 223 IPR015300 -
Tsu08g01612 417 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 13 349 IPR044835 GO:0003677|GO:0006355|GO:0009725
Tsu08g01612 417 SUPERFAMILY DNA-binding pseudobarrel domain 119 222 IPR015300 -
Tsu08g01612 417 CDD B3_DNA 123 221 IPR003340 GO:0003677
Tsu08g01612 417 ProSiteProfiles B3 DNA-binding domain profile. 121 223 IPR003340 GO:0003677
Tsu08g01612 417 Pfam B3 DNA binding domain 128 222 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu08g01612 Tsu-Chr8 19121362 19130319 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu08g01612 20 350 B3 DNA Binding Superfamily AT5G62000 42.816 1.13e-90 290
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Tsu08g01612 B3 2.1e-19 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu08g01612 - - cam:101505502 451.055