Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu08g01607 ATGCTCCCTTCTCAACTCTCACTTGCTTGTTCCTCAAAAGACGTTAAAAAAAGGACAAGCGTGGATTATAGGAAATTAGTCATTGGTGACTTGATCAGAGAAGGGTCATACTATAATGTATACAAAGGAAGGTATGCATACCATCCTGTTGCTATTAAGATGTTAATCCCAGATAGAACAGAGGATGCTCCACAAGAATATAAGGCCAAATTTCTGAGGGAGAGCAAATTGTTATCTAAGATTGAACATAACAACGTTATCAAGTTCATTGCAGCCTCTGTGGAACCATCGATAATAATCACGGAACTCATGGAAGGTGATTCACTACAGCAAATTTTGAAAAGGATCAATCCAATAACTTTTAGTTTGGAACAATGTTTAAGCTATGCTCTTGATGTTTCACAAGCTATGGAATGTTTGCATGCAAATGGCATCGTTCACCGAGATCTTAAGCCTGGTAATTTAGTGCTTACAGAAGATCGAAATCATGTTAAACTTGCTGATTTTGGGTTTGCTAGAGATGATATATGTGATGAGATGACTTGTGAAGCTGGTACTTATCGATATATGGCTCCTGAgCAAATGAGCAAAGATCCACTTCCAAAGGGAGCCAAGAAAAGCTATGATCACAAGGCAGATGTGTACAGTTTTGCACTAGTTCTTTGGTCTATGATCAAGAATCAAATTCCATTTAAAGATATGAAAGACTTAATGGCTGCTTATGCTACAAAAAACAATATAAGGCCAAGTTTGGATGACCTTCCTGAAGATATAGTTCCTCTGCTGCAATCATGTTGGGTGGAAGATCCAAAACTCAGACCAGAATTCAAGGAAATCACTGAAACACTTAGAAAGATTCTTCTAAACATTTACACAACAAAGATTGATGCACTTCCCAGCGTAAAAGAGAATGCAGAAGCTGGTAGCAAAAGTGAGGAAGAGTCCTCAAAGGAAAATGAAAACATCCTCAAACATGATATTGAGACCATAGAACCCAACAGCGGAACAAACTTTGTCCAGTATCCCACGATGGATGAGATATGGTTCAAAAATGTGGTTAGAGGTGAAGTTCAATCTCCATTACAATCTCAATCTGAGCTTCGGAGTGGAATGCAAATGTCATTCCATGACTTGGctgaaaagaaacataaaaagaaatgtATGATTAAGCGTTGGTTTGCTTATTTTCGTAGTTGCCTGCCTTTGATATAG 1212 0.3746 MLPSQLSLACSSKDVKKRTSVDYRKLVIGDLIREGSYYNVYKGRYAYHPVAIKMLIPDRTEDAPQEYKAKFLRESKLLSKIEHNNVIKFIAASVEPSIIITELMEGDSLQQILKRINPITFSLEQCLSYALDVSQAMECLHANGIVHRDLKPGNLVLTEDRNHVKLADFGFARDDICDEMTCEAGTYRYMAPEQMSKDPLPKGAKKSYDHKADVYSFALVLWSMIKNQIPFKDMKDLMAAYATKNNIRPSLDDLPEDIVPLLQSCWVEDPKLRPEFKEITETLRKILLNIYTTKIDALPSVKENAEAGSKSEEESSKENENILKHDIETIEPNSGTNFVQYPTMDEIWFKNVVRGEVQSPLQSQSELRSGMQMSFHDLAEKKHKKKCMIKRWFAYFRSCLPLI 403
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu08g01607 403 Pfam Protein tyrosine and serine/threonine kinase 28 283 IPR001245 GO:0004672|GO:0006468
Tsu08g01607 403 PRINTS Tyrosine kinase catalytic domain signature 139 157 IPR001245 GO:0004672|GO:0006468
Tsu08g01607 403 PRINTS Tyrosine kinase catalytic domain signature 212 234 IPR001245 GO:0004672|GO:0006468
Tsu08g01607 403 PRINTS Tyrosine kinase catalytic domain signature 254 276 IPR001245 GO:0004672|GO:0006468
Tsu08g01607 403 PRINTS Tyrosine kinase catalytic domain signature 101 114 IPR001245 GO:0004672|GO:0006468
Tsu08g01607 403 PANTHER PROTEIN KINASE ATN1-LIKE PROTEIN-RELATED 15 319 - -
Tsu08g01607 403 PANTHER SERINE-THREONINE PROTEIN KINASE 15 319 - -
Tsu08g01607 403 Gene3D Transferase(Phosphotransferase) domain 1 106 331 - -
Tsu08g01607 403 ProSitePatterns Serine/Threonine protein kinases active-site signature. 145 157 IPR008271 GO:0004672|GO:0006468
Tsu08g01607 403 CDD STKc_MAP3K-like 32 283 - -
Tsu08g01607 403 SMART serkin_6 26 288 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu08g01607 403 ProSiteProfiles Protein kinase domain profile. 26 287 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu08g01607 403 SUPERFAMILY Protein kinase-like (PK-like) 20 294 IPR011009 -
Tsu08g01607 403 Gene3D Phosphorylase Kinase; domain 1 8 105 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu08g01607 Tsu-Chr8 19046957 19052670 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu08g01607 21 316 MAP Kinase Kinase Kinase AT5G66710 48.993 5.04e-97 294
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK TKL-Pl-4 Tsu08g01607 PK_Tyr_Ser-Thr 2.3e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu08g01607 - K04427 gmx:106796450 341.658