Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu08g01555 ATGTTCCAAGATCCTTCAATCAAGCTTTTTGGAAGtgatattcaaattcatattcCCATTAACTCAACAGATTTACACTCTCAGATTCACTCTCttccacaacaacaacaacaacccatCATTATCATGAATGGACTTGAAGAAGAATCAACTAATGCTGATGGTGGTGTTCCTTTGAATGAAGTTTCTAGCAAACAAGCTAATCCTCAAACAGATGCTAATTCTTTTCCGAACATGCACGAAACTGGCACTTTGAAACCGGCGACCAAAGCATTTCATAGAACTAACGAACACAGGACTGCCAAAAGAGATACCGACAATCAAGAGAAAGCTTTCAAGAAGCCAGACAAGGTTCTTCCGTGTCCTCGCTGCAATAGTTTGGAGACAAAGTTTTGCTATTTCAACAATTACAATGTTAACCAACCAAGACATTTCTGCAAAAAATGTCAGAGGTATTGGACAGCTGGGGGAGCAATAAGGAATGTTCCTATCGGAGCTGGTAAGCGTAGAAATAAGCATCCAACTCTGCAGAATTGTCAAGTTCCTGTTACCCTTGATGTTGTACCTGTCATACACATGGATTCCAACCCTGCTAGTCTCAATGAGGAAGTTCCTCTTAGTGAATCACTAGAAGTGTTAAATCTTAAGGGCCATCGAAAAATTGAGATCGACTTGTCCACTGTCAAAGAGGATATTGATGAACCTTCTCGCTCTTCTGTGGGAGCTGCCGAATCCGGCGATATGGAGCATTCGGAAAATGGAATAGAGCATGTTGGTTTGACACCACAATACAACGGCTTAATTCCCGTACATTCACTTCATTATTATTCGGCTCCTCCATGGACTTGTCAATGGAATCCGTGTTGGGATCCTACGGCATTTAAGCCTGAAAACATAACTTCAAGTCCTTCAACCATGATGGCAGTAGAAATACCAATGGCACCTTCATCATATTGGGGTTGTATACCAAATTGGGTTGGCCAAATGGAAGAATTTAACGGCATTCCATCGCCTTCATCTTCGGTTAGCAGCGGCACTTGTTCCGGTAATAGGTCACCAACTTTAGGAAAACATTGTAGAGATGGAAGTACACAAGAAGAAGATACGATGAAGCCGAATATTTGGGTGCCTAAAACTATCAGAATTAACGATCCAGAAGAGGCTGCTAAGAGTTCTATATGGTCAACTTTAGCAACAAAATCCAAACAGAACAAACCTGTTATGAAAGGAagtgtttttaaatcatttgAACCTAAGTCAAAAGCAAGTTCTCGTGATTTAGATGATAATCAAATTCTAAGAGCAAACCCTGCTGCTTTCTCTCGCTCGGGATCTTTCCAAGAAAGCATGTAA 1353 0.3939 MFQDPSIKLFGSDIQIHIPINSTDLHSQIHSLPQQQQQPIIIMNGLEEESTNADGGVPLNEVSSKQANPQTDANSFPNMHETGTLKPATKAFHRTNEHRTAKRDTDNQEKAFKKPDKVLPCPRCNSLETKFCYFNNYNVNQPRHFCKKCQRYWTAGGAIRNVPIGAGKRRNKHPTLQNCQVPVTLDVVPVIHMDSNPASLNEEVPLSESLEVLNLKGHRKIEIDLSTVKEDIDEPSRSSVGAAESGDMEHSENGIEHVGLTPQYNGLIPVHSLHYYSAPPWTCQWNPCWDPTAFKPENITSSPSTMMAVEIPMAPSSYWGCIPNWVGQMEEFNGIPSPSSSVSSGTCSGNRSPTLGKHCRDGSTQEEDTMKPNIWVPKTIRINDPEEAAKSSIWSTLATKSKQNKPVMKGSVFKSFEPKSKASSRDLDDNQILRANPAAFSRSGSFQESM 450
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu08g01555 450 MobiDBLite consensus disorder prediction 56 77 - -
Tsu08g01555 450 Pfam Dof domain, zinc finger 116 173 IPR003851 GO:0003677|GO:0006355
Tsu08g01555 450 PANTHER DOF-TYPE ZINC FINGER DNA-BINDING FAMILY PROTEIN 7 450 - -
Tsu08g01555 450 ProSitePatterns Zinc finger Dof-type signature. 121 157 IPR003851 GO:0003677|GO:0006355
Tsu08g01555 450 MobiDBLite consensus disorder prediction 50 77 - -
Tsu08g01555 450 MobiDBLite consensus disorder prediction 336 359 - -
Tsu08g01555 450 MobiDBLite consensus disorder prediction 400 450 - -
Tsu08g01555 450 PANTHER CYCLIC DOF FACTOR 2 7 450 IPR045174 GO:0003700|GO:0006355
Tsu08g01555 450 MobiDBLite consensus disorder prediction 336 367 - -
Tsu08g01555 450 MobiDBLite consensus disorder prediction 436 450 - -
Tsu08g01555 450 ProSiteProfiles Zinc finger Dof-type profile. 119 173 IPR003851 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu08g01555 Tsu-Chr8 18223932 18226419 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu08g01555 84 449 C2C2-Dof Transcription Factor Family AT5G39660 38.071 6.73e-60 201
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Tsu08g01555 zf-Dof 3.6e-31 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu08g01555 - - cam:101489693 625.55