Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu08g01554 ATGATGGAAACAAAAAACCCATCTGGGAATTCTTCGAAGTTTGAAACTTCAATGCATAATTCATCATCAAGAAGAAGTTTTGGTAGGAATTCAACAAGAGAAGTGACTTTTGGTCACTCAGAGTCAAAACCTTCTGTGAGGTATGGGTCAAAGGGTGCTGATTCTGAAGCTTTTAGTATGTCTCAGAAAGAAATTAGTGATGAAGATGCTAGGTTGATTTATGTTGATGATCCTGTTAAGACAAATGAGAGATTTGAATTTGCAGGGAATTCGGTTCGAACCGGAAAGTACTCTTTCATAACTTTTCTTCCTAGGAATTTGTTTGAACAGTTTCATAGAGTTGCTTATATTTATTTCCTTATAATTGCTATTCTTAATCAGTTACCTCAACTAGCTGTTTTTGGAAGAGGTGTTTCGATTTTGCCATTGGCTTTTGTTCTTCTTGTTACTGCTGTGAAAGATGCATATGAAGATTGGAGGAGACATAGGTCTGATAAAGTTGAGAACAATAGGTTAGGATTGGTTTTGGTTAATGGTCAATTTATTGAGAAGAAATGGAAGGATATTAGAGTTGGTGAGATCATTAAAATCAATGCAAATGAACCAATTCcttgtgattttgttttgttgtcaaCTAGTGACCCTACTGGTGTTGCTTATGTTCAGACACTTAATCTAGATGGTGAGTCTAATTTGAAGACTAGATATGCGAAACAAGAGACTCAATTCAAGTTTCATGAAAAGGAGAGGTTTAATGGTTTGATTAAGTGTGAGAAACCGAATAGGAATATATATGGATTTCAGGCTACTATGGAGGTTGATGGAAAAAGGCTGTCCCTTGGTTCTTCCAATATTGTACTTAGAGGGTGTGAACTTAAGAATACTAATTGTGTGGTTGGCGTTGCCGTGTATTGTGGTCGTGAGACTAAAGCTATGCTCAACAACTCAGGAGCTCCGTCTAAGAGGAGTCGTCTCGAGACTCAAATGAACTCTGAGATCATCATGCTTTCTTTCTTCCTTGTAGCTTTGTGTACGGTCACTTCAGTTTGTGCTGCTGTTTGGTTAAACCGAAACAAGAATGAGTTGAATCTATTGCCTTATTATAGGAAATTGGATGTTTCAAAGGGAAAAGAGGAAAATTATCAATATTATGGATGGGGAATGGAAATGCTTTTCACGTTCCTCATGTCGGTTATAGTGTACCAGGTTATGATCCCGATATCGCTGTACATTTCTATGGAGCTTGTCCGTGTTGGTCAGGCGTACTTCATGATCAAAGATTCTAGATTGTATGATGAGGCAACAAATTCAAGATTTCAATGTAGGGCTTTGAATATCAACGAAGATTTAGGGCAAATTAAATATGTCTTTTCCGATAAAACTGGTACTCTGACTGAGAACAAGATGGAGTTTCAATGCGCAAGTATTTGGGGTGTTGATTACAGTTCCGCAAAAACCAACCTTGAGAATGAACAAGTTGAATACTCTCTTAAAGTGGAAGGAAAGGTCTTGAAGCCAAAGTTGAAGGTGAAAGTTAATCAAGAGCTTTTGAGATTAACAAAAAGTGGATTTGCAAACAAAGATGGAAAACGGATTTATGATTTCTTTCTTGCATTGGCAGCATGCAATACTATTGTGCCTCTTGTTATTgacacatctgaccctacagTCAAGCTGATAGATTATCAAGGGGAATCACCAGATGAACAAGCATTGACATATGCTGCTGCTGCCTATGGTTTTATGCTTATTGAACGAACCTCAGGTCACATAGTCATTGATATTCATGGAGAAAGACAAagGTTTAATGTCTTGGGTTTACATGAATTTGATAGTGATCGGAAAAGGATGTCAGTTATATTGGGGTACAGTGACAATTCGGTGAAACTTTTTGTCAAAGGAGCAGATACATCAATGTTTAGTGTGATCAATAAATCATTGAATACAGACATACTACAAGCAACAGAAACCCATATTCAATCTTATTCATCCGTGGGTTTGAGGACACTTGTTATTGGCATGCGGGACTTGAATGCTTCAGAATTTGATCAATGGCACTTTGCCTTTGAGGCAGCAAGTACTTCTGTGATCGGTAGGGCTGCGTTGCTTCGCAAAGTTGCTACCAATGTAGAGAACAACGTTTGCATATTGGGTGCTACCGCTATTGAAGATAAATTGCAGCAAGGTGTGCCAGAATCTATTGAGTCTCTAAGGAAAGCCGGTATTAAAGTATGGGTATTGACTGGTGACAAACAGGAAACTGCCATATCAATTGGCTACTCCTCAAGGCTACTAACAAGTGGCATGACTCAATTTAGAATTAAGAGCAATAATAGAGAGTCGTGTCGAAGACGTTTACAAGATGCACTTCTCATGTCTCGAAAAAATATGGCTGCACCTGAGGTTGGCAACTATTTTGAAGGAAGTTCTGATGGTGTTGTTTCAACTCCGATGGCTTTGATTATTGATGGTACCAGCCTTGTATATATCCTTGACAATGAACTTGAAGAAGAGCTCTTTGAACTTGCACGAAGATGTTCCGTTGTTCTTTGTTGTCGAGTGGCTCCGTTGCAAAAGGCTGGGATTGTCTCTCTTGTGAAGAAAAGGACGGCTGACATGACTCTAGCCATTGGAGATGGTGCTAATGATGTATCAATGATCCAAATGGCTGATGTTGGGGTTGGCATCAGTGGTCAGGAGGGTAGGCAAGCTGTAATGGCTTCAGATTTTGCAATGGGACAGTTTAGGTTTTTAGTACCTCTCTTATTTATACACGGACACTGGAATTACCAACGACTTGGCTACATGGTGCTATACAATTTTTACAGAAATGCCGTCTTTGTCTTAATACTTTTTTGGTATGTGCTCTTCACTGCCTTCACTTTGACAACTGCTATAAATGAATGGAGCAGCATGTTGTATTCAATAATCTACACTGCCGTGCCAACTATTGTTGTTGGTATTCTTGACAAGGATCTTAGTAAAAGGACTCTTCTTGATAATCCTCAGCTTTATGGGGCTGGACAAAGACAAGAGGCCTACAACAAAAAACTGTTCTGGTTGACAATGGCCGATACTTTATGGCAAAGCATTGTTGTCTTTTATGTTCCTCTCTTTGCATATTGGGGAAGCACTGTAGATATAGCAAGCATAGGGGATCTTTGGACCCTTTCTGTAGTTATTTTGGTCAATTTGCATTTGGCCATGGATGTAATCAGATGGACTTGGATTACTCATGCATCCATTTGGGGGTCTGTCATTGCAACTTTCATATGTGTCACGATTATTGATGCTATACCATCACTCCGTGGTTACTGGGCTATCTTTGATGCTGCAGGCACGGCATTGTTCTGGTTATGTTTGCTTGGAATACTGATAGCAGCATTACTTCCACGTTTTgttgtaaaatttgtatatcaatattattaccCCGATGATATTCACACTAGTAATTGA 3456 0.3828 MMETKNPSGNSSKFETSMHNSSSRRSFGRNSTREVTFGHSESKPSVRYGSKGADSEAFSMSQKEISDEDARLIYVDDPVKTNERFEFAGNSVRTGKYSFITFLPRNLFEQFHRVAYIYFLIIAILNQLPQLAVFGRGVSILPLAFVLLVTAVKDAYEDWRRHRSDKVENNRLGLVLVNGQFIEKKWKDIRVGEIIKINANEPIPCDFVLLSTSDPTGVAYVQTLNLDGESNLKTRYAKQETQFKFHEKERFNGLIKCEKPNRNIYGFQATMEVDGKRLSLGSSNIVLRGCELKNTNCVVGVAVYCGRETKAMLNNSGAPSKRSRLETQMNSEIIMLSFFLVALCTVTSVCAAVWLNRNKNELNLLPYYRKLDVSKGKEENYQYYGWGMEMLFTFLMSVIVYQVMIPISLYISMELVRVGQAYFMIKDSRLYDEATNSRFQCRALNINEDLGQIKYVFSDKTGTLTENKMEFQCASIWGVDYSSAKTNLENEQVEYSLKVEGKVLKPKLKVKVNQELLRLTKSGFANKDGKRIYDFFLALAACNTIVPLVIDTSDPTVKLIDYQGESPDEQALTYAAAAYGFMLIERTSGHIVIDIHGERQRFNVLGLHEFDSDRKRMSVILGYSDNSVKLFVKGADTSMFSVINKSLNTDILQATETHIQSYSSVGLRTLVIGMRDLNASEFDQWHFAFEAASTSVIGRAALLRKVATNVENNVCILGATAIEDKLQQGVPESIESLRKAGIKVWVLTGDKQETAISIGYSSRLLTSGMTQFRIKSNNRESCRRRLQDALLMSRKNMAAPEVGNYFEGSSDGVVSTPMALIIDGTSLVYILDNELEEELFELARRCSVVLCCRVAPLQKAGIVSLVKKRTADMTLAIGDGANDVSMIQMADVGVGISGQEGRQAVMASDFAMGQFRFLVPLLFIHGHWNYQRLGYMVLYNFYRNAVFVLILFWYVLFTAFTLTTAINEWSSMLYSIIYTAVPTIVVGILDKDLSKRTLLDNPQLYGAGQRQEAYNKKLFWLTMADTLWQSIVVFYVPLFAYWGSTVDIASIGDLWTLSVVILVNLHLAMDVIRWTWITHASIWGSVIATFICVTIIDAIPSLRGYWAIFDAAGTALFWLCLLGILIAALLPRFVVKFVYQYYYPDDIHTSN 1151
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu08g01554 1151 SFLD Haloacid Dehalogenase 441 928 - -
Tsu08g01554 1151 SUPERFAMILY Metal cation-transporting ATPase, ATP-binding domain N 463 729 IPR023299 GO:0000166
Tsu08g01554 1151 SUPERFAMILY Calcium ATPase, transduction domain A 172 311 IPR008250 -
Tsu08g01554 1151 Gene3D - 713 917 IPR023214 -
Tsu08g01554 1151 Pfam Cation transport ATPase (P-type) 565 640 - -
Tsu08g01554 1151 MobiDBLite consensus disorder prediction 1 55 - -
Tsu08g01554 1151 Gene3D - 147 314 - -
Tsu08g01554 1151 SUPERFAMILY HAD-like 452 932 IPR036412 -
Tsu08g01554 1151 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 848 963 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Tsu08g01554 1151 PANTHER PHOSPHOLIPID-TRANSPORTING ATPASE 13 1149 - -
Tsu08g01554 1151 PRINTS Sodium/potassium-transporting ATPase signature 450 471 - -
Tsu08g01554 1151 PRINTS Sodium/potassium-transporting ATPase signature 954 974 - -
Tsu08g01554 1151 SUPERFAMILY Calcium ATPase, transmembrane domain M 88 1144 IPR023298 -
Tsu08g01554 1151 Gene3D - 558 691 IPR023299 GO:0000166
Tsu08g01554 1151 TIGRFAM ATPase-Plipid: phospholipid-translocating P-type ATPase, flippase 87 1149 IPR006539 GO:0000287|GO:0005524|GO:0015914|GO:0016021|GO:0140326
Tsu08g01554 1151 SFLD p-type atpase 441 928 IPR044492 -
Tsu08g01554 1151 Pfam Phospholipid-translocating P-type ATPase C-terminal 905 1144 IPR032630 -
Tsu08g01554 1151 PRINTS P-type cation-transporting ATPase superfamily signature 864 876 - -
Tsu08g01554 1151 PRINTS P-type cation-transporting ATPase superfamily signature 740 750 - -
Tsu08g01554 1151 PRINTS P-type cation-transporting ATPase superfamily signature 457 471 - -
Tsu08g01554 1151 CDD P-type_ATPase_APLT_Dnf-like 89 1037 - -
Tsu08g01554 1151 MobiDBLite consensus disorder prediction 1 39 - -
Tsu08g01554 1151 Pfam E1-E2 ATPase 175 414 - -
Tsu08g01554 1151 Pfam Phospholipid-translocating ATPase N-terminal 73 138 IPR032631 -
Tsu08g01554 1151 PANTHER PROBABLE PHOSPHOLIPID-TRANSPORTING ATPASE 13 1149 - -
Tsu08g01554 1151 ProSitePatterns E1-E2 ATPases phosphorylation site. 459 465 IPR018303 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu08g01554 Tsu-Chr8 18206498 18212982 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu08g01554 22 1150 Primary Pumps ATPases AT5G04930 70.000 0.0 1672
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu08g01554 K14802 - gmx:100784988 1881.3