Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu08g01548 ATGAAGAAGtctccaccatcttcaagttcatcatcttcatcttcaattgGATTTGAGAATCCAATTAAATCAGAGAAAAAAAGAGGTGCTAAGAATCCAAAAAAGAATCTCAATCTCAAGTCACAAAATTTCAAGCAGAAGAAGAACCAAACAAATGGTGGTAGTAGAAGAAGCTCCATTTATAGAGGAGTTACAAGACATAGGTGGACTGGAAGATTTGAAGCTCATCTTTGGGATAAGAGTTCTTGGAACAACATTCAGAGCAAGAAGGGAAAACAAGGTGCTTATGATACTGAAGAAGCAGCAGCTCGTACCTATGATCTTGCAGCACTTAAGTATTGGGGAAAGGATGCAACCTTGAATTTCCCgATAGAAACTTATGCAAAAGAGTTTGAGGAAATGGACAAGTCCTCAAAAGAAGAGTATTTGGCTTCTTTGCGGCGGCAAAGCAGTGGCTTTTCTAGAGGCATTTCTAAGTACCGTGGAGTTGCCAGGCATCACCATAATGGTCGCTGGGAAGCTCGAATTGGAAGAGTTTGTGGTAACAAATATCTCTATTTGGGCACATACAAAACTCAAGAAGAGGCAGCAGTGGCATATGATATGGCAGCAATAGAATACAGAGGAATGAATGCAGTGACAAATTTTGACATAAGCAACTATGTggacaaaatgaaaaacaagaaaaatgatgAAACAGAACAAATAGAACCACAACAAACAATAACAGAAATTGTTCCTAATAATTCCTCTGATTCTGAAGAACTATCAGAAGAACAAACAACAGCTACACCACCTCAAGAAATcgaacaacaacatcaacaagttcaacaagaacaacaacaaaatgtgCCTGCAATTGTTCATGAGGAACACACAACAGTTAATATTATGGATCATTACTTTGACCAAGATTGGAGCTGCATGTATAATGGGTTGTTAGAGTTTCAAGACACAAACATGGATTTCAACAAAGGAGGTGGTGAagatttaattgatatattcGATGGCTCGGGTTTTGTGGAAGACATTGGTTTAATGTTCAACACAGAAGAACCTTATGGTGGTGTTGAAAGTGATATCAATATCAGTGAAGTTTTGAAGGGTATTGATTGTGGAGGATTATTAAATAATGGAGATGTTGGAAACATGTTtgtgaatgatgatgatgataacaACAAGGAGAAGGAACTATTATCCATAGAATCTTTTtcaccatcatcttcaacaACTACATTTTCTTTGTaa 1248 0.3253 MKKSPPSSSSSSSSSIGFENPIKSEKKRGAKNPKKNLNLKSQNFKQKKNQTNGGSRRSSIYRGVTRHRWTGRFEAHLWDKSSWNNIQSKKGKQGAYDTEEAAARTYDLAALKYWGKDATLNFPIETYAKEFEEMDKSSKEEYLASLRRQSSGFSRGISKYRGVARHHHNGRWEARIGRVCGNKYLYLGTYKTQEEAAVAYDMAAIEYRGMNAVTNFDISNYVDKMKNKKNDETEQIEPQQTITEIVPNNSSDSEELSEEQTTATPPQEIEQQHQQVQQEQQQNVPAIVHEEHTTVNIMDHYFDQDWSCMYNGLLEFQDTNMDFNKGGGEDLIDIFDGSGFVEDIGLMFNTEEPYGGVESDINISEVLKGIDCGGLLNNGDVGNMFVNDDDDNNKEKELLSIESFSPSSSTTTFSL 415
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu08g01548 415 MobiDBLite consensus disorder prediction 236 281 - -
Tsu08g01548 415 ProSiteProfiles AP2/ERF domain profile. 159 217 IPR001471 GO:0003700|GO:0006355
Tsu08g01548 415 SMART rav1_2 60 129 IPR001471 GO:0003700|GO:0006355
Tsu08g01548 415 SMART rav1_2 159 223 IPR001471 GO:0003700|GO:0006355
Tsu08g01548 415 MobiDBLite consensus disorder prediction 1 20 - -
Tsu08g01548 415 ProSiteProfiles AP2/ERF domain profile. 60 123 IPR001471 GO:0003700|GO:0006355
Tsu08g01548 415 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR WRI1 2 343 - -
Tsu08g01548 415 Gene3D AP2/ERF domain 158 219 IPR036955 GO:0003700|GO:0006355
Tsu08g01548 415 Gene3D AP2/ERF domain 60 125 IPR036955 GO:0003700|GO:0006355
Tsu08g01548 415 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 2 343 - -
Tsu08g01548 415 CDD AP2 158 219 IPR001471 GO:0003700|GO:0006355
Tsu08g01548 415 MobiDBLite consensus disorder prediction 1 60 - -
Tsu08g01548 415 MobiDBLite consensus disorder prediction 229 281 - -
Tsu08g01548 415 Pfam AP2 domain 60 115 IPR001471 GO:0003700|GO:0006355
Tsu08g01548 415 Pfam AP2 domain 158 210 IPR001471 GO:0003700|GO:0006355
Tsu08g01548 415 CDD AP2 59 124 IPR001471 GO:0003700|GO:0006355
Tsu08g01548 415 MobiDBLite consensus disorder prediction 35 59 - -
Tsu08g01548 415 PRINTS Ethylene responsive element binding protein signature 61 72 IPR001471 GO:0003700|GO:0006355
Tsu08g01548 415 PRINTS Ethylene responsive element binding protein signature 199 219 IPR001471 GO:0003700|GO:0006355
Tsu08g01548 415 SUPERFAMILY DNA-binding domain 59 125 IPR016177 GO:0003677
Tsu08g01548 415 SUPERFAMILY DNA-binding domain 158 219 IPR016177 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu08g01548 Tsu-Chr8 18136698 18142180 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu08g01548 10 265 AP2-EREBP Transcription Factor Family AT5G57390 52.060 2.91e-81 255
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-AP2 Tsu08g01548 AP2 1.4e-09 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu08g01548 - - gmx:100527432 463.766