Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu08g01547 ATGGATGAATATCATTGTAAGGCATGGCTACGTATGTCCGATTCCAATACACAAACTATTTCATGTGATGACAACAAGTATTTCAACATTCAATTTGAGTACAAAACTATGTTTGTTCCGGTTCAATCTTCTTTTCGACACATCATCCGACGTCACACTCTTCACAACGTTTCAATCGATAAGATGATGGACGAAAATACCTTTGTGCCATTGCTTTCTCAAATAAATGTTCCTCAAGATGCTTTTACATTGGTGGTAGAAGAAATCATGCAATGTGCTTCTAATAtagttaatgatgatgatgagactTATAAGAACCGGAACATTTTTACTACGCGAGTCGATTTTTCTGTTACAAAGGCTATTGAAGATGTTGattgtgaagaagaagaagagaacaaTATTTTGGAAGACAATGTCGAGATAATAGatcttgaagaagaagaagaagaagaagaagaagaagaagaagaagaagaagggaaCAATAGTTTGCAAGAGGATGTTGAGATAATAGATATTGAAGAAGAAACTAACGAGTTGGTTCATGATGTTCCaattattgaaattgaaagtgatgaagatgatttggAAGAGGATGGAGAGCTAATGATGTTTGAAGAAGAATATACTAGGTTTATTCCTGCGGCCAAATTATGTATAGAAGAATTGAAGATGGTAAAAGTAGAAAATGTAACAAAATGTATCATTTGTCTTGAAGATGTTGACATTGGTGTTCCATTGCCATGTTCCCACACATTTCACAAAAATTGCATTCAAGATTGGTTAGTCATAGGTCATTCTTGTCCTTTATGTCGATTTCAATTGCCTACCGGCAATATGAATGAATAA 852 0.2934 MDEYHCKAWLRMSDSNTQTISCDDNKYFNIQFEYKTMFVPVQSSFRHIIRRHTLHNVSIDKMMDENTFVPLLSQINVPQDAFTLVVEEIMQCASNIVNDDDETYKNRNIFTTRVDFSVTKAIEDVDCEEEEENNILEDNVEIIDLEEEEEEEEEEEEEEEGNNSLQEDVEIIDIEEETNELVHDVPIIEIESDEDDLEEDGELMMFEEEYTRFIPAAKLCIEELKMVKVENVTKCIICLEDVDIGVPLPCSHTFHKNCIQDWLVIGHSCPLCRFQLPTGNMNE 283
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu08g01547 283 CDD RING-H2 235 273 - -
Tsu08g01547 283 SUPERFAMILY RING/U-box 234 277 - -
Tsu08g01547 283 Coils Coil 128 168 - -
Tsu08g01547 283 ProSiteProfiles Zinc finger RING-type profile. 235 273 IPR001841 -
Tsu08g01547 283 PANTHER F6A14.12 PROTEIN-RELATED 100 278 - -
Tsu08g01547 283 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 221 276 IPR013083 -
Tsu08g01547 283 MobiDBLite consensus disorder prediction 146 165 - -
Tsu08g01547 283 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 100 278 - -
Tsu08g01547 283 SMART ring_2 235 272 IPR001841 -
Tsu08g01547 283 Pfam Ring finger domain 234 273 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu08g01547 Tsu-Chr8 18133162 18134013 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu08g01547 204 278 C3H Transcription Factor Family AT5G60820 36.667 3.00e-12 64.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu08g01547 - - cam:101499491 182.956