Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu08g01539 ATGATATATAAAGGTGCCAATTCTGTCCTATGGAGTTTTGTTTTGGCCATTCTAATCGCCATAGTTTTCACTCCAAAATTTAGTTTTGCAAAACAATCTAAGTTAATGGGCATCAAAATCAATATGATTGATAATTGTTGGAGACCAAATACTGAATGGAGGAGGCATAGACAACAACTAGCGACTTGCTCTATAGGCTATGTTGGAAAAATGACAAACAACATTGGTAATGACCTCATCCATTATACAGTTACTGACCCAAATGACGATCCCATAAATCCCAAACCTGGTATGTTGAGATACGGAACTTCTGTAATTCAAGGTAAAGTGTGGATCACATTCCAAAAAGACATGAACATCAGGCTCATGAAACCACTTCTCATTAGTAGTTTCACTACCATTGATGGTCGTGGCGTTATTGTGCACATTGCTGATAATGCATGCTTAATGATAAACAAGgCCACCAACATAATCATTCATAGCCTTCGAATTCATCACTGCAAAGCTCAAGCATCGGGGATGGTGATGGGGCCTAATGGAAAGGTAATTCATATTGGTCCAATAGATGGAGATGCAATTAGATTGGTCACGGCATCAAAAATCTGGATTGATCATAATACACTTTATGGATGTGAAGATGGACTTCTTGATGTCACAAGAGGTTCTACTAATGTCACTGTATCCAATAATTGGTTTAGAGAACAAGATAAGGTTATGCTTCTTGGTCATGATGATGGGTATGTGAGGGACAAAAACATGAAAGTTACTGTCGTGTACAATCATTTTGGGCCTAACTGCAACCAACGGATGCCAAGAATTCGGTTTGGATATGCACATTTAGccaacaatttttatttagggTGGATGCAATACGCCATCGGTGGAAGCATGGGGCCTAGCCTTAAAAGTGAATCTAACCTCTTCATAGCACCAAAAATTGGGAGTAAAGAGATAACATGGAGAAAAATTGGCGGTATGAATGGAGACAAATGGAAATTTTATTCGGTTAGAGATGCATTTGAAAATGGAGCCTCTTTCGTGGCAACAAAAGGAGGACTTGTGCCAAAGCCGAATTATAGTAAAGAACAAAGTTTTAAAGTTGTTGATGTCAAATCTGTTAGATCATTGACAAGATCATCAGGTGCACTTAAATGCAGTAGGACCTCTatatgttga 1176 0.3767 MIYKGANSVLWSFVLAILIAIVFTPKFSFAKQSKLMGIKINMIDNCWRPNTEWRRHRQQLATCSIGYVGKMTNNIGNDLIHYTVTDPNDDPINPKPGMLRYGTSVIQGKVWITFQKDMNIRLMKPLLISSFTTIDGRGVIVHIADNACLMINKATNIIIHSLRIHHCKAQASGMVMGPNGKVIHIGPIDGDAIRLVTASKIWIDHNTLYGCEDGLLDVTRGSTNVTVSNNWFREQDKVMLLGHDDGYVRDKNMKVTVVYNHFGPNCNQRMPRIRFGYAHLANNFYLGWMQYAIGGSMGPSLKSESNLFIAPKIGSKEITWRKIGGMNGDKWKFYSVRDAFENGASFVATKGGLVPKPNYSKEQSFKVVDVKSVRSLTRSSGALKCSRTSIC 391
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu08g01539 391 PANTHER PECTATE LYASE 2 388 - -
Tsu08g01539 391 PANTHER PECTATE LYASE 18-RELATED 2 388 IPR045032 GO:0030570
Tsu08g01539 391 Pfam Pectate lyase 131 308 IPR002022 -
Tsu08g01539 391 Gene3D - 40 384 IPR012334 -
Tsu08g01539 391 SMART amb_all 117 314 IPR002022 -
Tsu08g01539 391 PRINTS Pollen allergen Amb family signature 125 141 IPR018082 -
Tsu08g01539 391 PRINTS Pollen allergen Amb family signature 189 210 IPR018082 -
Tsu08g01539 391 PRINTS Pollen allergen Amb family signature 291 310 IPR018082 -
Tsu08g01539 391 PRINTS Pollen allergen Amb family signature 331 355 IPR018082 -
Tsu08g01539 391 PRINTS Pollen allergen Amb family signature 88 113 IPR018082 -
Tsu08g01539 391 PRINTS Pollen allergen Amb family signature 362 385 IPR018082 -
Tsu08g01539 391 PRINTS Pollen allergen Amb family signature 269 288 IPR018082 -
Tsu08g01539 391 SUPERFAMILY Pectin lyase-like 81 387 IPR011050 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu08g01539 Tsu-Chr8 18071704 18073328 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu08g01539 71 318 Polysaccharide Lyase AT5G09280 70.565 2.90e-137 392
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu08g01539 K01728 - gmx:100780437 646.351