Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu08g01484 ATGGAACAACAACAACTTCCTACAAGAAGAGTGCAGAGGGTAGATATTACTGATTCTGTTATGATTTTTGATGCTATTGATCTATATCTCCCTCCTCTATCTTCTTATCACACTCTTAGCCGAAACCTATTAACAAGAAATCACAATCGTAATGTCTCATCATCCGCTTATGTTGATGGTCACCAGATTTTTGATGTAGTAAACAACATCAACCAACTCAGTAATCAAGTCCAATCTAGTACAAGAAACGTTGAAACTAATCAAAGACAACATTTTTATCGCAATCTTCCAAGGATCAAAGTTACTGAAGCAATGACGTGTTCTGTTTGTCTTGTGGAGTTTTTGGTTGGATCGAAAGCAATTCAGTTGCCTTGTTCGCATATCTATCATGACGAATCTGATACAGCCACAAGCAAAGGTCATAACTACACCAGCATAGGGGACAACACAACCAAACGAGATACAGTGTATGGTCTCTATGATTGCCGCGGTGATGTGGTTGGATATTTTTGTCAACTTTGTGTCTCTGCTGCTGCCAGAGAGGTTCTTGACTGTTGCCTTAATAGAGTCTCGGCTACTATGTTCTATAGCTTCTGCATTTTTAGAAACATCCATGTTAGGAGAAGGTGGCTTTGGCTCGGTCTACAGGGAATTCTGCCTGATGGAAAACAAATAGCAGTAAAAAGGCTCTCAAAAAATTCTGGTCAAGGCTCAGAGGAGTTAAAGAATGAAGTAATGTTTATAGCTAAATTGCAACATCGCAACCTTGTAAGACTTTTGGCATGCTGCTTGGAAGGAAATGAAAAGTTACTTGTGCATAAACATTGGTCTGTTGTGTATTCAAGAAGACGTGGCAGATAG 861 0.3937 MEQQQLPTRRVQRVDITDSVMIFDAIDLYLPPLSSYHTLSRNLLTRNHNRNVSSSAYVDGHQIFDVVNNINQLSNQVQSSTRNVETNQRQHFYRNLPRIKVTEAMTCSVCLVEFLVGSKAIQLPCSHIYHDESDTATSKGHNYTSIGDNTTKRDTVYGLYDCRGDVVGYFCQLCVSAAAREVLDCCLNRVSATMFYSFCIFRNIHVRRRWLWLGLQGILPDGKQIAVKRLSKNSGQGSEELKNEVMFIAKLQHRNLVRLLACCLEGNEKLLVHKHWSVVYSRRRGR 286
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu08g01484 286 PANTHER CYSTEINE-RICH RECEPTOR-LIKE KINASE 216 277 - -
Tsu08g01484 286 Pfam Protein tyrosine and serine/threonine kinase 223 274 IPR001245 GO:0004672|GO:0006468
Tsu08g01484 286 SUPERFAMILY Protein kinase-like (PK-like) 219 273 IPR011009 -
Tsu08g01484 286 Pfam RING-like zinc finger 107 131 IPR001841 -
Tsu08g01484 286 ProSiteProfiles Gnk2-homologous domain profile. 103 208 IPR002902 -
Tsu08g01484 286 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 216 277 - -
Tsu08g01484 286 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 131 202 - -
Tsu08g01484 286 SUPERFAMILY RING/U-box 90 131 - -
Tsu08g01484 286 Gene3D - 118 203 IPR038408 -
Tsu08g01484 286 Coils Coil 70 90 - -
Tsu08g01484 286 Pfam Salt stress response/antifungal 139 202 IPR002902 -
Tsu08g01484 286 PANTHER CYSTEINE-RICH RECEPTOR-LIKE KINASE 131 202 - -
Tsu08g01484 286 Gene3D Phosphorylase Kinase; domain 1 212 275 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu08g01484 Tsu-Chr8 17124473 17126934 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu08g01484 216 277 Receptor kinase-like Gene Family AT4G23130 64.516 1.44e-19 86.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Tsu08g01484 Stress-antifung 1.5e-06 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu08g01484 - - gmx:100796972 105.916