Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu08g01460 ATGAGTCCCTTTCGAGTGGTTTCCACAAGTACAATCAAGGCACCAAATGTGGGTgactcacttgatcataaaattgatttaacCCCATGGGATCTTCAGTTCCTCCCATTTGGAACCAACCAAAAGGGATTCCTTTATCACCATCCCTCGGTGGTAAACACGTCGATACAAATCGAACATTTTAAACACTCTCTTTCATCTGCACTTGCATTTTTTCCACCATTATTAGGCCGTCTTGAAATAACGAAATACGAAGATAATACTATTTCATGTTCCATTGCATGCAATAATGCCGGTGCACTTTTTGTTCATGCCATTGCTGAGAACACATATGTCGCTGACATTCTCGATTCCACCTACATTCTTCCAATTTTTCACTCGTTATTTCCACTTAACAGAGTTATAAACTACGAAGGTACATCAAATCCATTGCTTGCATTTCAATTAAATGAGTTAGTTGATggtatttttattagttatacAATGAACCATGTTGTCCTTGACGGTGTGTCCAATATGCATTTCCTCAATTCATTAGATGAAATCTCACGTGGTTGCCATCAAATATCTCTACCTCCAACACTTAAACGTTGGTTCCCAAATAACATTCAACGTCCAATACGATTTCCTTTCATGATAGAGACATCACAGAAGAATCATTCCGACGAAAAAAAACTCAACTTAGATGAGACTGTTTTCCATTTCACAAAGGAGAATATCGCGATACTAAAATTAAAAGCCAACATTGAGGCTCATACTAGcaccaaaaaaatatcatccttGCAAGCGATTTGCACTCACCTATGGCGTGCTGTCATCCGTTCCAAACAACTTGACCCAAAGGAAGAAGTGAATTTCGTTTTATGTATAAGCGTTAGACCGAAATTGGTTCCACAATTGCAAGAGGATTATTTTGGAAATGCTTTGGTACTTTGTGGAGTTACAATGAATGTTGGGGAGCTATTAGAAGAAGGCGGGCTTGGTAAAGGTGCATTAGAGATGTCGAAAATGATTGCTTTGTACTCTGATGAAAAGTTAAAGATTCAATATGAATCTTGGACGCGAACGCCGAGCTATGTTAAGGTTGGTAGTGTGACCAATAGAAATTCATTGGTTCTTAGTTGTTCCCCATTGTTCGATCTTTACAATTTAGATTTTGGTTGGGGAAAACCTGTGGCAATTCGAAGTGGGAGTTCAAATAAAAGTAATGGAAAAATTACAGTGTTTGCTGGTGCAAAAAAAGGTAGTATGgattttgaagtgtgtcttccaTACGAGAATTTGGAGGCAATGAGAAATGACTCTGAATTTATCATGAGTAATGCTTCCAATTTGAACCTAGATCATCTTCAACCTAGCAGACTGTAg 1368 0.3604 MSPFRVVSTSTIKAPNVGDSLDHKIDLTPWDLQFLPFGTNQKGFLYHHPSVVNTSIQIEHFKHSLSSALAFFPPLLGRLEITKYEDNTISCSIACNNAGALFVHAIAENTYVADILDSTYILPIFHSLFPLNRVINYEGTSNPLLAFQLNELVDGIFISYTMNHVVLDGVSNMHFLNSLDEISRGCHQISLPPTLKRWFPNNIQRPIRFPFMIETSQKNHSDEKKLNLDETVFHFTKENIAILKLKANIEAHTSTKKISSLQAICTHLWRAVIRSKQLDPKEEVNFVLCISVRPKLVPQLQEDYFGNALVLCGVTMNVGELLEEGGLGKGALEMSKMIALYSDEKLKIQYESWTRTPSYVKVGSVTNRNSLVLSCSPLFDLYNLDFGWGKPVAIRSGSSNKSNGKITVFAGAKKGSMDFEVCLPYENLEAMRNDSEFIMSNASNLNLDHLQPSRL 455
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu08g01460 455 PANTHER FAMILY REGULATORY PROTEIN, PUTATIVE (AFU_ORTHOLOGUE AFUA_3G14730)-RELATED 4 439 - -
Tsu08g01460 455 PANTHER ANTHRANILATE N-HYDROXYCINNAMOYL/BENZOYLTRANSFERASE-LIKE PROTEIN 4 439 - -
Tsu08g01460 455 Pfam Transferase family 20 437 - -
Tsu08g01460 455 Gene3D - 212 433 IPR023213 -
Tsu08g01460 455 Gene3D - 4 206 IPR023213 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu08g01460 Tsu-Chr8 16859182 16860549 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu08g01460 46 429 Monolignol Biosynthesis Gene Families AT5G48930 24.242 7.24e-26 107
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu08g01460 - - gmx:100500257 464.922