Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu08g01453 atgaatcgCGGTGGTGTTGCCGGAGCTAAGGGAAAGAAGATGGGTGCAACCTTCACCATTGACCGTGCTAAACCAGTTGAAGACAAGATCATGGACATTGCTTCTCTTGAGAAGTTTCTTCAAGAGAGGATTAAGGTCGGCGGTAAAGCCGGTGCTCTCGAAATGGTTTCCCAACTAGATGTTGGATGTTCAAACTTTGTTACTCAAGATGATTGA 216 0.4398 MNRGGVAGAKGKKMGATFTIDRAKPVEDKIMDIASLEKFLQERIKVGGKAGALEMVSQLDVGCSNFVTQDD 71
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu08g01453 71 PANTHER 60S RIBOSOMAL PROTEIN L22 1 54 IPR002671 GO:0003735|GO:0005840|GO:0006412
Tsu08g01453 71 Gene3D - 6 68 IPR038526 -
Tsu08g01453 71 Pfam Ribosomal L22e protein family 16 56 IPR002671 GO:0003735|GO:0005840|GO:0006412
Tsu08g01453 71 PANTHER 60S RIBOSOMAL PROTEIN L22-2 1 54 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu08g01453 Tsu-Chr8 16805480 16805873 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu08g01453 1 53 Cytoplasmic Ribosomal Protein Gene Family AT3G05560 81.132 3.73e-24 85.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu08g01453 K02891 - gmx:100499952 88.1965