Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu08g01449 ATGGAATCGGATCTCGGCAAGCTCTTCATTGGAGGAATATATTGGGACACTGACGAGGAACGTCTAAGGGAGTATTTTGCGACGTATGGGGAGGTAATTGAGGCTGTGATCGTGCGAGATCGCGCAGCAGGTCGTGCTTGTGGTTTTGGATTCGTTGTCTTTGCTTATCCTGCTGTTGCTGAGAGAGTCATTATCGACAAGCACATAATTGACGGCCGCACAGTTGAAGCAAAGAAAGCTGTTCCTAGGAATGATCGGTACAATATAAACAGACAGACTGGTAGTGTACAAGGATCGCCTGGTCCCGGTCGTACAAAGTAG 321 0.4798 MESDLGKLFIGGIYWDTDEERLREYFATYGEVIEAVIVRDRAAGRACGFGFVVFAYPAVAERVIIDKHIIDGRTVEAKKAVPRNDRYNINRQTGSVQGSPGPGRTK 106
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu08g01449 106 PANTHER TRANSFORMER-2-RELATED 1 106 - -
Tsu08g01449 106 PANTHER HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN 1-LIKE ISOFORM X1 1 106 - -
Tsu08g01449 106 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 6 82 IPR000504 GO:0003723
Tsu08g01449 106 MobiDBLite consensus disorder prediction 83 106 - -
Tsu08g01449 106 Gene3D - 6 87 IPR012677 -
Tsu08g01449 106 SMART rrm1_1 7 78 IPR000504 GO:0003723
Tsu08g01449 106 SUPERFAMILY RNA-binding domain, RBD 4 104 IPR035979 GO:0003676
Tsu08g01449 106 MobiDBLite consensus disorder prediction 86 106 - -
Tsu08g01449 106 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 8 75 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu08g01449 Tsu-Chr8 16781557 16782078 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu08g01449 8 54 C2H2 Transcription Factor Family AT2G19380 44.681 5.67e-10 53.1