Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu08g01446 ATGGCTTcttatcaacatcatcatcatctcgaTGATCCTCAATGTTGGTTTTCTCACAAAACTTTTTCTCCTCACTGTACAACCTCCAAACCTGTTGTTCTTCAACAAACTCAAAATCGCATCTTGAAGGTCACATTTTTCTTATCTTCTGTCCGTAATAAGGATAACAATATGCATACTGAAAAGGGTTGGAAAAAGGGTTCGTTGTTGGAACGGAATGATCAAGATGCCGTTGACTTGTGTACATTTTTGCCCCCAAAAACCCACAAGACCAAGAAACGTTCCAAGAGATTTGTTGATGATGCTGATGTTCGTGATGTCGTGCAATCGTTGCTGGCCATGTCTCGTGGTAAATCTTTATATGTTGATGCAGATAATCAACCTCGCTACGATAAGATGGAATCGGATCTCGGCAAGCTCTTCATTGGAGGAATATCTTGGGACACTGATGAGGAACGTCTAAGGGAGTATTTTGCGACGTATGGGGAGGTAATTGAGGCTGTGATCGTGCAAGATCGCGCAACAGGTCGTGCTCGTGGTTTTGGATTCGTTGTCTTTGCTGATCCTGCTGTTGCTGAGAGAGTCAATATCGACAAGCACATAATTGACGGCCGCACAGTTGAAGCAAAGAAAGTTGTTCCAAGGAATGATCGATACAATATAAACAGACAGACTGGTAGTGTACAAGGATCGCCTGGTCCCGGTCGTACAAATAGTGATGACGTACGGTTCTTTGTCGAGTCCATTAGGATATCACGATCTGTTGATAAAACTGGTTTGAGGGCTTTAGCTGTGGTTACAAAGGCTGCTAAATCTCCCGATGGATTGCCGGAGAAGGTTACTGCTGATGATGTAAACATAGGTCTCGGTTATGTTTGTGTAAGGAATCGAATTTGGGAGGAGTCTTATGAAGAGGCCAGAAATGAAGAACAGAAGCGGTTTGAGTCTCATACTCTTCTTTCCAAAATAGATAAATCTATGGTGGGAATTCCTGTTTTGGCAAAAAAGCTTGTTCATGTGCAAGCCATGATTATATCAAAAATTTTGCCTGGGATCATTAAGAAAATTAATGAGAAGCTTAACAATAGTTTATACGAGTTGGAAAATTTACCAGCCAATTTGTCCTCATTGGATGATTCTATGTCAGCTTTTCTGCAAATTGTTTCTCTGTCAAGGGATTCTTCTGATAGGAGAATTTGA 1200 0.405 MASYQHHHHLDDPQCWFSHKTFSPHCTTSKPVVLQQTQNRILKVTFFLSSVRNKDNNMHTEKGWKKGSLLERNDQDAVDLCTFLPPKTHKTKKRSKRFVDDADVRDVVQSLLAMSRGKSLYVDADNQPRYDKMESDLGKLFIGGISWDTDEERLREYFATYGEVIEAVIVQDRATGRARGFGFVVFADPAVAERVNIDKHIIDGRTVEAKKVVPRNDRYNINRQTGSVQGSPGPGRTNSDDVRFFVESIRISRSVDKTGLRALAVVTKAAKSPDGLPEKVTADDVNIGLGYVCVRNRIWEESYEEARNEEQKRFESHTLLSKIDKSMVGIPVLAKKLVHVQAMIISKILPGIIKKINEKLNNSLYELENLPANLSSLDDSMSAFLQIVSLSRDSSDRRI 399
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu08g01446 399 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 140 206 IPR000504 GO:0003723
Tsu08g01446 399 SUPERFAMILY RNA-binding domain, RBD 129 238 IPR035979 GO:0003676
Tsu08g01446 399 Gene3D - 138 219 IPR012677 -
Tsu08g01446 399 Gene3D - 245 395 IPR027417 -
Tsu08g01446 399 CDD RRM1_hnRNPA_hnRNPD_like 140 210 - -
Tsu08g01446 399 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 138 214 IPR000504 GO:0003723
Tsu08g01446 399 Pfam Dynamin central region 279 394 IPR000375 -
Tsu08g01446 399 SMART rrm1_1 139 210 IPR000504 GO:0003723
Tsu08g01446 399 PANTHER DYNAMIN-RELATED PROTEIN 4C 246 394 - -
Tsu08g01446 399 PANTHER DYNAMIN 246 394 IPR022812 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu08g01446 Tsu-Chr8 16766450 16769153 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu08g01446 140 186 C2H2 Transcription Factor Family AT2G19380 46.809 2.11e-10 60.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu08g01446 - - lja:Lj4g3v2618590.1 216.853