Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu08g01423 ATGGGTTCTTCAGTAGGAGGCAATGGTGTGGAGTGGCACGTGCGTCCTCCAAACCCTAAAAACCCAATCGTCTTCTTCGATGTCACCATCGGTAACATACCCGCCGGTAGAATCAAAATGGAACTCTTCGCTGATATTGCCCCCAAAACCGCTGAGAATTTCAGGCAGTTCTGCACGGGAGAGTACAGGAAAGCAGGACTTCCTATTGGTTACAAGGGTTGTCAATTTCATAGAGTGATTAAGGACTTTATGATTCAGGCTGGTGATTATGTAAAGGGTGATGGTAGTGGATGTGCTTCTATctatggacttaagtttgatGACGAGAATTTCACTGCCAAACACACTGGACCAGGTCTTCTATCAATGGCAAATAGCGGACCAAATACCAATGGCTGTCAGTTCTTTATAACTTGTGCAAAATGTGACTGGCTAGACAACAAGCATGTCGTTTTTGGGAGAGTACTTGGAGACGGTCTTTTGGTCGTGAGGAAGATTGAGAATGTTGCAACTGGACCCAATAACCGGCCAAAATTAGCTTGCGTCATTGCTGAATGTGGTGAAATGTAA 570 0.4368 MGSSVGGNGVEWHVRPPNPKNPIVFFDVTIGNIPAGRIKMELFADIAPKTAENFRQFCTGEYRKAGLPIGYKGCQFHRVIKDFMIQAGDYVKGDGSGCASIYGLKFDDENFTAKHTGPGLLSMANSGPNTNGCQFFITCAKCDWLDNKHVVFGRVLGDGLLVVRKIENVATGPNNRPKLACVIAECGEM 189
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu08g01423 189 ProSiteProfiles Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain profile. 25 188 IPR002130 GO:0000413|GO:0003755
Tsu08g01423 189 PANTHER PEPTIDYL-PROLYL CIS-TRANS ISOMERASE H 18 189 - -
Tsu08g01423 189 CDD cyclophilin_ABH_like 22 187 - -
Tsu08g01423 189 PANTHER PEPTIDYL-PROLYL CIS-TRANS ISOMERASE 18 189 - -
Tsu08g01423 189 SUPERFAMILY Cyclophilin-like 12 189 IPR029000 -
Tsu08g01423 189 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 42 57 IPR002130 GO:0000413|GO:0003755
Tsu08g01423 189 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 76 88 IPR002130 GO:0000413|GO:0003755
Tsu08g01423 189 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 119 134 IPR002130 GO:0000413|GO:0003755
Tsu08g01423 189 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 134 146 IPR002130 GO:0000413|GO:0003755
Tsu08g01423 189 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 147 162 IPR002130 GO:0000413|GO:0003755
Tsu08g01423 189 Pfam Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD 26 187 IPR002130 GO:0000413|GO:0003755
Tsu08g01423 189 Gene3D - 11 189 IPR029000 -
Tsu08g01423 189 ProSitePatterns Cyclophilin-type peptidyl-prolyl cis-trans isomerase signature. 71 88 IPR020892 GO:0003755|GO:0006457
Tsu08g01423 189 PIRSF Peptidylpro_ismrse 12 189 IPR024936 GO:0003755
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu08g01423 Tsu-Chr8 16516840 16523381 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu08g01423 18 187 U-box Gene Family AT5G67530 42.442 2.06e-29 112
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu08g01423 K09567 - gmx:100305521 382.489