Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu08g01418 ATGTTCAATACACCAACACCTTATCTATATCTCAAAAACCACTTAACTTTCCCTCTTATCATCCATCACTCTCCATCTCCATCTTGTTCTCTGCATTTTTCCACCAACAACACTTCTGATTCAACAACCTCATTTGCAGTCTCCTACCTCATTAACAATTTTAACTTCACTCCACAATATGCTTCCAAACTCTGTTCCACTTACGAGATTCGTTTCCAGACTTCCGAAAAACCTGATTTAGTTCTCAACTTCTTTAGAAACAATGGTTTCTCAGAAACCCAATTATGTTCTATCATTTCCAAGGCACCAAGGTTACTTACATGTGACCCCTTCATAAGGGTCGTcccaaagtttgaattttttctctccaaagGTGCTTCTAAATCTGACATTGTTAGCATGGTCAGTAAGTACCCTAGGCTCCTGTATTCAAGCCTGGAGAATCATATCGTCCCGACATATGAATTGCTGTATAGATTCTTGCAATCACACACAATTGCCTGTGCAATTTACTATCCAAAAATACTTATCGACTATCGTGTGCCACGTAACATCAGATTGCTCATTGAGATTGGAGTGCCCAACCCAAACATTGCAACATTGCTTCAGAAGCAGTGTAGGGCATTCATTATACCTAACATGCCGATGTTGATCGAGGAATTAAAGAATTTGGGTTTTAATCCTTCAGAAAAAACCTTTGCTAGAGCATTGGAAGCCAAATTATCTGTAAACAATACATTGTGGAAAAAGAAAGTCGATGCCTTTAAGAAATGGGGCTGGTCTGATGAAGATATTGTGGAAGGGTTTAGAAAGCATCCTCATTATATGTTAACATccatcaaaaaaattaatttagtgaTGAATTTTTGGGTCAATCAGTTAGGTTGGGATGCTCTTGCCATTGCCAAAATACCAAGGGTTATTGAGTACAGTCTGGAGAGAAGGATCATTCCTAGGGCGGAAGTAGTGCAATTTCTGCTGAAGAAAGGTCTGCGAAAAAAGAATGCAAGCTTAACTTTACCATTTGTATTGCCTGAGAAGTTGTTTCTTGATAAGACAAAACTGACATGTCATGAACAAATTTTCAGGTTCACACAATTTCCTAAGGAAGGCTTATGTTTAAGATTGATTAGTAATTATCTGATTTCTAAATACTTTTCCTTTGGTTATGTAGTTTCTGTTAGTGCCAAGGGAAGATTTATGTAG 1206 0.364 MFNTPTPYLYLKNHLTFPLIIHHSPSPSCSLHFSTNNTSDSTTSFAVSYLINNFNFTPQYASKLCSTYEIRFQTSEKPDLVLNFFRNNGFSETQLCSIISKAPRLLTCDPFIRVVPKFEFFLSKGASKSDIVSMVSKYPRLLYSSLENHIVPTYELLYRFLQSHTIACAIYYPKILIDYRVPRNIRLLIEIGVPNPNIATLLQKQCRAFIIPNMPMLIEELKNLGFNPSEKTFARALEAKLSVNNTLWKKKVDAFKKWGWSDEDIVEGFRKHPHYMLTSIKKINLVMNFWVNQLGWDALAIAKIPRVIEYSLERRIIPRAEVVQFLLKKGLRKKNASLTLPFVLPEKLFLDKTKLTCHEQIFRFTQFPKEGLCLRLISNYLISKYFSFGYVVSVSAKGRFM 401
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu08g01418 401 PANTHER TRANSCRIPTION TERMINATION FACTOR FAMILY PROTEIN 23 357 - -
Tsu08g01418 401 Gene3D Transcription termination factor 3, mitochondrial 61 175 IPR038538 -
Tsu08g01418 401 Gene3D Transcription termination factor 3, mitochondrial 176 367 IPR038538 -
Tsu08g01418 401 Pfam mTERF 240 339 IPR003690 GO:0003690|GO:0006355
Tsu08g01418 401 Pfam mTERF 82 214 IPR003690 GO:0003690|GO:0006355
Tsu08g01418 401 PANTHER CGI-12 PROTEIN-RELATED 23 357 IPR003690 GO:0003690|GO:0006355
Tsu08g01418 401 SMART mt_12 96 127 IPR003690 GO:0003690|GO:0006355
Tsu08g01418 401 SMART mt_12 266 297 IPR003690 GO:0003690|GO:0006355
Tsu08g01418 401 SMART mt_12 132 163 IPR003690 GO:0003690|GO:0006355
Tsu08g01418 401 SMART mt_12 298 332 IPR003690 GO:0003690|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu08g01418 Tsu-Chr8 16479725 16481827 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR mTERF Tsu08g01418 mTERF 1.7e-17 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu08g01418 K15032 - gmx:102663414 344.354