Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu08g01417 ATGCAAGTGTCACCAAAGGAAATTATATATGAAAGCAGAGAGGTGTCCAAAGAAGCTCAGAAAGCATTTAGAAAATTTTCTTTAAATGGTGAAAGTGTTTGGGTCACTTGTGAAAAGCCTTCGGACTACTTTGAGTTTGTTGCTTCTACTACAGAAAGAGGAGCCTCTAATATCATCCTTGACCAAGCTGGTGGCGTGGGCTTGAACTTGACTGCAACGTCAAATGTTTTCCTTATGGATCCATGGTGGAATCCTGCGGTTGAGGAGCAAGCAATAATGAGGATTCTTTGA 291 0.4124 MQVSPKEIIYESREVSKEAQKAFRKFSLNGESVWVTCEKPSDYFEFVASTTERGASNIILDQAGGVGLNLTATSNVFLMDPWWNPAVEEQAIMRIL 96
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu08g01417 96 CDD SF2_C_SNF 16 95 - -
Tsu08g01417 96 PANTHER TRANSCRIPTION TERMINATION FACTOR 2-RELATED 20 95 - -
Tsu08g01417 96 Gene3D - 11 96 IPR027417 -
Tsu08g01417 96 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 61 95 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu08g01417 Tsu-Chr8 16466458 16468865 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu08g01417 62 95 RAD5 or RAD16-like Gene Family AT5G43530 91.176 7.09e-17 72.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu08g01417 K15505 - sspl:121774897 72.7886