Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu08g01416 ATGGCTAGCAGCATCAACTCCACTGCTTTAGCTCTGACATTGCCAAAGAAGAGGAAGAATTATTATGATGTGTTTGTCACATACAGAGGTGAAGACACTCGCAACAATATCactgattttctttttgatgcCCTCGAAGACAAAGCCGTTTCTGTATTTAGGGATGACACTAATCTTCCAAAAGGTGAATCCATTGGACCCGAGCTCCTTCGTGCAATCGAAGACTCTCATATTTTCGTTGTCATCTTCTCAAAGAACTATGCTTCCTCAACTTGGTGCTTGCAAGAATTGGAAAAGATATGTGAATGCGTTCAAGTGTGTGGAAAACATATTTTGCCTGTTTTCTATGATGTCGATCCTTCTGAGGTGCGAAAGCAAAGTGGGATTTTTGGTGAAGAATTTGTCAAACATGAAAAAAGATTCCAACATGACTATGAGATGGTGCAAAGATGGAGGAAAGCTCTCACACAAGTGGGAAAAATCTCTGGTTGGGATGTGCGTCATAAGCCACAATCTGCACAAATTAAAGAGATTGttcaaagaataataaatattCTGGATTGCGAATTTTCATGTGTTTCAAAAGATTTAGTTGGGATGGATTTTCCAatacaagaattagaaaatcATTTACTTTTGAACTCTATTGATGATGTTCGGGTTGTAGGAATCTGTGGAATGAAAGGTATAGGGAAGACAACCCTTGCCACTACTTTGTATGCTAGAGTCTCTAATCAATTTGGTGCATGTTGTTTTATTGATGATGTAAGCAAAGTTTATAGATCACATGATGGTCCATTTGGTTTACGAAAACAAATTCTACATCAAACTCTCGGCGAAGAACACCATCAGATACACAATAATCCTAACGCAATTAATCTGATGCAACGTAAACTATGCCGTGTAAGAACCCTTCTAATTCTTGATAATGTTGATCATGttaagcaaataaaaataatacctGCAAATCGTGAATGGTTAGGTGCAGGTAGTAGAATCATTATCATTTCTAGAGATGAACATATCTTGAGAAAGTACGGAGTGAATGTTGTTTATAAAGTTCCACTCTTGAATAAGACTAACTCTCTAGAATTATTTTGCCGACAAGGTTTCAAACTTGATCATATTTTAAGTAGTTATGAAGGGCTGGTTAGTGGCATATTGCGTTATACCAGTGGTCTACCACCGACAATTGAAGTATTGAGCTCATTTTTAGATGGTCTAAATATTAATGAATGGAGAAGTGCATTGTCTAGATTGAGAAAAAGTCTAGACAAAGATATCATGGATGTGCAACAAATAAGTTTTGACGGGCTAGACAAGccagaaaaagaaatatttctTCATATTGCGTGTCTTTTTAACTTAATTGACGCGGATTATGTTAAAAATGTTCTAAATTGTTGTGGATCTTATGCTGATATTGGATTGAGAATTCTCATTGATAAATcacttataaaaattgagaatgAAGGCATAATTTATTGGAAGAGTTCGGCAGAAAAGTTGTCCAAAAGAATTCAAGCAAAGAGTGAAGAAAGTGGAAAAAGTTGTGGTTTGGGGAACAATTCTACGATTGTTATTATGACGGAGATTAATTTTGAATCTCTTAATCTTGATGAGGAAGAAGAATTGAATTTTGTGGTGGGGGAGGATACTCATGAACAACACGACTTGAATCTTTGTCTGGTGGGTCGCTTCGTTCATGACAGACCCATACGGTTTAATAGTATAAAGGCATGCTTAGCCGATGTTTGGAGACCAGTGAAGGGTATGACAGTGAAGGAAGCTACTCAAGGGTTGTAtctattcaaatttttccaCCCTCTGGATGTGGAGGAGGTTCTCAAAGGTGGGCCTTGGACTTTTGATAGCTTTACATTGATTATTGATAGGTTGAAGATAGGGGTTGCTCTACAGGATGTACCAATTGGCATGATGCTTGAGACGGTGGGGAGAGGTATTGCGAATTATATTggggaatttgtggagtatgaTAAGAATAACAACACAAGTTTCTGGAGGAAGTATATGAGGGTAAAAGTTAGGGTGGATGTCAGGAGCCCGTTGAAGATCGAGAAAAAGATCaaattgaatggtggaaagGGGGGTGCTGTGAAGTTTAAGTATGAAAAACTCggtttgttttgctttgtatgTGGACGACTTGGTCATGCAGAAAATAAGTGTGAGGTTAAGTATGCTATGGAAAGAGATGACGGTCGGAAGAGCTGGTCAAATGAGATAAAGGCGGAAGTAAGACGTCCTGGTGGTAGGGTGGGGTCGCGATGGCTGCATGAGGAAGGGCGAAATATGGCTGACGTGGATGCGAGTAACACCTTAGGAGAGAGGGGGTCACAACATACTGGACCCGCCCAAACTAGTGTGGCATCCCCACGTGAGAGTAGAGGTCCTGAGAATGGCGGGATAATGTCTACTGTTAGGGGTCATAGCCCACCATTAAGGCCAGCAGCAGTTAGACAATCAAGTTCAAACCAGGGTTCATTTATTGAAGCACCTACTGTACCTTTGATCTCCAATCGGCCTATACTAGCCATAAACAATGTTAATACCACAACAGCCCAATTGACCACATCACTAGCTCTAAATGAAGGAAATCAGCTTGATCCTGATGATATGGATACTCaggtggagagaaagagaagaagggctGCATGTTTAGTAGCGGAGGGATCAGAAGTTCGAACTAatcagcattttttatcggcaggtcctggtagttcccaggactgccgggactcatga 2766 0.3633 MASSINSTALALTLPKKRKNYYDVFVTYRGEDTRNNITDFLFDALEDKAVSVFRDDTNLPKGESIGPELLRAIEDSHIFVVIFSKNYASSTWCLQELEKICECVQVCGKHILPVFYDVDPSEVRKQSGIFGEEFVKHEKRFQHDYEMVQRWRKALTQVGKISGWDVRHKPQSAQIKEIVQRIINILDCEFSCVSKDLVGMDFPIQELENHLLLNSIDDVRVVGICGMKGIGKTTLATTLYARVSNQFGACCFIDDVSKVYRSHDGPFGLRKQILHQTLGEEHHQIHNNPNAINLMQRKLCRVRTLLILDNVDHVKQIKIIPANREWLGAGSRIIIISRDEHILRKYGVNVVYKVPLLNKTNSLELFCRQGFKLDHILSSYEGLVSGILRYTSGLPPTIEVLSSFLDGLNINEWRSALSRLRKSLDKDIMDVQQISFDGLDKPEKEIFLHIACLFNLIDADYVKNVLNCCGSYADIGLRILIDKSLIKIENEGIIYWKSSAEKLSKRIQAKSEESGKSCGLGNNSTIVIMTEINFESLNLDEEEELNFVVGEDTHEQHDLNLCLVGRFVHDRPIRFNSIKACLADVWRPVKGMTVKEATQGLYLFKFFHPLDVEEVLKGGPWTFDSFTLIIDRLKIGVALQDVPIGMMLETVGRGIANYIGEFVEYDKNNNTSFWRKYMRVKVRVDVRSPLKIEKKIKLNGGKGGAVKFKYEKLGLFCFVCGRLGHAENKCEVKYAMERDDGRKSWSNEIKAEVRRPGGRVGSRWLHEEGRNMADVDASNTLGERGSQHTGPAQTSVASPRESRGPENGGIMSTVRGHSPPLRPAAVRQSSSNQGSFIEAPTVPLISNRPILAINNVNTTTAQLTTSLALNEGNQLDPDDMDTQVERKRRRAACLVAEGSEVRTNQHFLSAGPGSSQDCRDS 921
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu08g01416 921 MobiDBLite consensus disorder prediction 780 801 - -
Tsu08g01416 921 Gene3D - 188 351 IPR027417 -
Tsu08g01416 921 ProSiteProfiles TIR domain profile. 20 186 IPR000157 GO:0007165
Tsu08g01416 921 Gene3D - 356 440 IPR042197 -
Tsu08g01416 921 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 190 450 IPR027417 -
Tsu08g01416 921 Pfam Zinc knuckle 684 731 IPR025836 -
Tsu08g01416 921 SUPERFAMILY Toll/Interleukin receptor TIR domain 19 164 IPR035897 -
Tsu08g01416 921 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 23 492 IPR044974 GO:0006952
Tsu08g01416 921 Pfam NB-ARC domain 205 426 IPR002182 GO:0043531
Tsu08g01416 921 Gene3D - 16 187 IPR035897 -
Tsu08g01416 921 ProSiteProfiles Zinc finger CCHC-type profile. 717 730 IPR001878 GO:0003676|GO:0008270
Tsu08g01416 921 PANTHER DISEASE RESISTANCE PROTEIN (TIR-NBS-LRR CLASS), PUTATIVE-RELATED 23 492 - -
Tsu08g01416 921 PRINTS Disease resistance protein signature 391 405 - -
Tsu08g01416 921 PRINTS Disease resistance protein signature 298 312 - -
Tsu08g01416 921 PRINTS Disease resistance protein signature 221 236 - -
Tsu08g01416 921 Pfam Domain of unknown function (DUF4283) 555 682 IPR025558 -
Tsu08g01416 921 MobiDBLite consensus disorder prediction 778 834 - -
Tsu08g01416 921 SUPERFAMILY "Winged helix" DNA-binding domain 427 497 IPR036390 -
Tsu08g01416 921 SMART till_3 21 161 IPR000157 GO:0007165
Tsu08g01416 921 Pfam TIR domain 22 183 IPR000157 GO:0007165
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu08g01416 Tsu-Chr8 16461274 16464688 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu08g01416 22 494 WRKY Transcription Factor Family AT4G12020 27.615 2.75e-45 176
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu08g01416 - - mtr:MTR_6g488300 642.499