LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Tsu08g01410	ATGGGGCCACTGAGGTCTGCTATTAAAGAAGCATGTGAGAAAACATTCTCAGTTGTAAAGTTCTTATGTGTTTTACATGTTACAAAAAACTACCTGGTTGACCCTGTTATGACTTATGGTCCTAGCATGCTTCCTGCAATTGATTTGGCACCAAACATCTTTCTTGCTGAAAAGATCTCAACTCGATTTGGTAAAGTTGCTCATGGAGATATTGTAGTTCATCGCTCACCTCAAAACCCTAGCAAGATATTCACGAAGCGCTTGGTTGGATTAGAGGGTGATAGCATTACATATGTTTCTGATCCCGATAACGGTGATACGCATGAAACAGTTGTGGTTCCAAAGGGTCACGTTTGGGTACAGGGCGATAACAAATATAATAGCAATGATTCTAGAAATTTTGGTCCAATTCCTTATGGCCTTATTGAGAGCAAGATATTCTGGAGGGTATGGCCACTTAAAGGTTTTGGATCGTTCTCGGAAAAATGA	489	0.4029	MGPLRSAIKEACEKTFSVVKFLCVLHVTKNYLVDPVMTYGPSMLPAIDLAPNIFLAEKISTRFGKVAHGDIVVHRSPQNPSKIFTKRLVGLEGDSITYVSDPDNGDTHETVVVPKGHVWVQGDNKYNSNDSRNFGPIPYGLIESKIFWRVWPLKGFGSFSEK	162

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Annotation information

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Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Tsu08g01410	162	TIGRFAM	sigpep_I_bact: signal peptidase I	18	99	IPR000223	GO:0006508\|GO:0008236\|GO:0016020
	Tsu08g01410	162	ProSitePatterns	Signal peptidases I signature 3.	118	131	IPR019758	GO:0004252\|GO:0016021
	Tsu08g01410	162	Pfam	Signal peptidase, peptidase S26	17	99	IPR019533	GO:0004252\|GO:0006465
	Tsu08g01410	162	Pfam	Signal peptidase, peptidase S26	109	151	IPR019533	GO:0004252\|GO:0006465
	Tsu08g01410	162	PANTHER	PROTEASE FAMILY S26 MITOCHONDRIAL INNER MEMBRANE PROTEASE-RELATED	3	161	-	-
	Tsu08g01410	162	PANTHER	PEPTIDASE S24/S26A/S26B/S26C FAMILY PROTEIN	3	161	-	-
	Tsu08g01410	162	CDD	S26_SPase_I	35	146	IPR019533	GO:0004252\|GO:0006465
	Tsu08g01410	162	SUPERFAMILY	LexA/Signal peptidase	31	159	IPR036286	-
	Tsu08g01410	162	Gene3D	Umud Fragment, subunit A	28	158	-	-
	Tsu08g01410	162	PRINTS	Bacterial leader peptidase 1 (S26A) family signature	31	47	IPR000223	GO:0006508\|GO:0008236\|GO:0016020

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Duplication type information

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Select	Gene	Chromosome	Start	End	Duplicated_type
	Tsu08g01410	Tsu-Chr8	16403481	16406638	Wgd

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Tsu08g01410	43	157	MADS-box Gene Family	AT1G29960	54.783	4.84e-44	140

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Pathway information

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Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Tsu08g01410	K09647		-	zju:107413489	213.001

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