Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu08g01401 ATGCAAACATTCACTACCTTGCGCGGTCCAAAACCCTTAACATATGACGTTTTCATCAGCTGCAGCGACGATACTCGCTTCAGTTTCACCGGCTTCCTCGCTCGTTCTCTCACCGATCGAGGATTCTACACATGTATTAATCATACTGAATCAATTCAAAACTGTAAGATTTTCATTTTCGTTATATCTCATGGTTATGTGTCTCGATTAGATGAACTTGTCAAAATCATGGATCAATTTGCAAAGGGGAATAATCTTCGTCGTCGAAGGATTTTGCCTGTTTTCTATCATGTTAATCCATCTGATGTTCGCCATCAGACTGGCAGTTTTGGAGAAGCATTTGATTCTGTTTGTAAGAATTTTGTCATACCTGATTATGAGAGGTTCCAAAAATGGATCAATGTTCTTCGTCAAGTAGCTGACTTTTATGGCTGGCATCTCGATCGAGCCAGGGGTATATATGAACACCAGTACATTGAGGAGATTCTTCAAGAGGTCTCTAAAGATGTGGCATGCTCAATTGGTCTAGATCGTCGAATAGAGAAAGTTATGGATTGTTTGAGTTCTGGATCTAATGATGATGGAGTCAGTGTAGTAGGGATATGTGGAGGTCCTGGACTAGGAAAAACAACACTAGTTCGTGGAGTTTATCATTTCGGTGGTGGCATCAAATTTGactattgttgtttttttgataAGGTGAGCGAGTATGTCATGAAACATGGATTAGTACATCTCTTACGGATGCTTCTCTATGAAATAGTTGGACACCACAACAGTACTATGTTTGAAAGTGTGGATGAAGGGATGTTGTCGAGGATAAAACTTATGCTCAGCCAAAAGAAGGTTTTCTTGATTGTTGAAGACATTCATAATTCAGAAGTCTTGGAAGCCATTGTTGAACTAACTACTTTCTTTGGTTCTGGTAGCAGAGTCATCATTACTACTCCGGATAAATATCTGCTACAACTTCATGGGATTGAAAGAATATACGAGGTAGAAAGACTGGACAACAAAGAGGCTTTTCAGTTTCTTAGTTTGAAAGCTTTTAATTCTGTGAATTTTAAACCCAGTTATTTGAGCATTTTAGAGCGAGCAGCAACTTATGCTTCTGGCCATCCATTCGTTTTGGAGGTAATAGGTTGCCATTTGAGTGGAAAAGGTGTAAAAGAATGTGAATCTGCACTAGGCCAATATGAAATAATTCCAAATCATGAGATTCAAAAGAtacttcaaataaattttgatgCCTTGGGGAAATATCGCCAGAGGATGTTAATTCACATTGCAATTCAGCCCAAAGAACGGGAATTATCTCTGGTTGAAGACACACTTTATAAGATTTATGGCGTCTGCCCAAAAAAAGATATCAGAGTGTTGTTTGataaagcttttataaaaaccaATGAGCTTGGTCGGGTGATATTACATGGTTTGACACTTGACATGGTTAGAGATAAAGCCTCACAAAAATATCCCTGCAAACACATTAGGTTGCAGAATGACATTCTAGAAGAAAATATGGAATATCCCTGCAAACGTAGTAGATCGTCTAAGGACACTTTAGACGAAAAGATGGAATATCACAAGCAAGAAACCCAACCCTCCTCAAATGATGGAAGCACGATTAGCGATCTGATGGAGTTCGAATATCAAAGCTGTTCTTCCACCTCTTCTCAAAATTCCATTCTCGATATTTCTGAGgTACATAATTAA 1716 0.3765 MQTFTTLRGPKPLTYDVFISCSDDTRFSFTGFLARSLTDRGFYTCINHTESIQNCKIFIFVISHGYVSRLDELVKIMDQFAKGNNLRRRRILPVFYHVNPSDVRHQTGSFGEAFDSVCKNFVIPDYERFQKWINVLRQVADFYGWHLDRARGIYEHQYIEEILQEVSKDVACSIGLDRRIEKVMDCLSSGSNDDGVSVVGICGGPGLGKTTLVRGVYHFGGGIKFDYCCFFDKVSEYVMKHGLVHLLRMLLYEIVGHHNSTMFESVDEGMLSRIKLMLSQKKVFLIVEDIHNSEVLEAIVELTTFFGSGSRVIITTPDKYLLQLHGIERIYEVERLDNKEAFQFLSLKAFNSVNFKPSYLSILERAATYASGHPFVLEVIGCHLSGKGVKECESALGQYEIIPNHEIQKILQINFDALGKYRQRMLIHIAIQPKERELSLVEDTLYKIYGVCPKKDIRVLFDKAFIKTNELGRVILHGLTLDMVRDKASQKYPCKHIRLQNDILEENMEYPCKRSRSSKDTLDEKMEYHKQETQPSSNDGSTISDLMEFEYQSCSSTSSQNSILDISEVHN 571
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu08g01401 571 MobiDBLite consensus disorder prediction 514 542 - -
Tsu08g01401 571 Gene3D - 156 327 IPR027417 -
Tsu08g01401 571 Gene3D - 335 419 IPR042197 -
Tsu08g01401 571 Gene3D - 5 139 IPR035897 -
Tsu08g01401 571 Pfam TIR domain 15 166 IPR000157 GO:0007165
Tsu08g01401 571 PANTHER RESISTANCE PROTEIN (TIR-NBS-LRR CLASS), PUTATIVE-RELATED 12 496 - -
Tsu08g01401 571 SUPERFAMILY Toll/Interleukin receptor TIR domain 11 145 IPR035897 -
Tsu08g01401 571 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 171 428 IPR027417 -
Tsu08g01401 571 Pfam NB-ARC domain 178 389 IPR002182 GO:0043531
Tsu08g01401 571 SUPERFAMILY "Winged helix" DNA-binding domain 406 475 IPR036390 -
Tsu08g01401 571 SMART till_3 14 142 IPR000157 GO:0007165
Tsu08g01401 571 PRINTS Disease resistance protein signature 370 384 - -
Tsu08g01401 571 PRINTS Disease resistance protein signature 198 213 - -
Tsu08g01401 571 PRINTS Disease resistance protein signature 277 291 - -
Tsu08g01401 571 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 12 496 IPR044974 GO:0006952
Tsu08g01401 571 MobiDBLite consensus disorder prediction 514 532 - -
Tsu08g01401 571 ProSiteProfiles TIR domain profile. 1 170 IPR000157 GO:0007165
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu08g01401 Tsu-Chr8 16333409 16337306 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu08g01401 196 485 WRKY Transcription Factor Family AT5G45050 29.110 1.28e-24 107
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu08g01401 - - mtr:MTR_8g039960 837.025