Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu08g01400 ATGCAATCCCCAAGTCGCTTGATCGGGCCAAAAGCCTTCAGATATTCTGTCTTTATCAGCTTCAGAGGTTCAGACACTCGATGCGGATTTAGTGGCTTCCTCAATAAAGATCTGATTGATGGAGGATTCCGCACGTTCTTTGATGATAGGGAGATTGAGAGAGGGGCTCAGATAAGAGTAAAAATTCCCAAGGCAATTGAAGATTCTAGGATTTTCATCCCTGTTTTATCGGAGAATTATGCATCTTCTTCATTTTGCTTAGATGAACTTGTGAAGATCCTTGAAGAATTTAAAAAGGGAAACGGTCGATGGATTTTTCCTGTTTTCTATTACGTTAATATCTCTGATGTGAAAAATCAAACAGGTAGTTATGGAAAAGCACTGGCTGTTCATAAAAACCGTGTCACGCCTGAGAGGTTAGAGAAATGGACCAATGCCTTGACTTCAGTTGCTGACTTTCGCGGCTGCCATATGGATAGGGCTAGGGGTATATATGAATTTCAATACATATATGAGATCATTCAAGAGGTATCTAAACATGTGGCTTACTCAATTGGCCTAGATCATCGAGTAGAAAAAGTTATGCATTGTTTGACTTCCGGATCAGACAATGACGGAGTCTGCATCGTAGGGATATGCGGAGTTCCTGGAATAGGAAAAACGACACTAGCTCGTGGAGTTTACCACTTCCATGGCAGCATCGAATTTGACTGTTGTTGCTTTTTTGATAATGTTGGAGAGTATCTAAAGAAACATGGATTAGTGCATCTCCAACAGATGCTTGTTTCTGAAATAGTTGGACATCACAACAGTACTATGTTTGAAAGTGTGGATGAAGGGATTTCAACGGCGATAAAACATATGCTCAACCAAAAGAAAGTTTTCTTGATTCTTGAAGACGTTCATGATTCGGAGGTCTTAAAAGCCATTGTAAAGCTGACTACTTGCTTTGGTTCTGGTAGCAAAGTCATCATTACTGCAAGGGAGAAATGTTTTCTAGAACTTCATGGCATTAAAAGAATATACGAGGTGGAAAGAATGAATAAGGTAGAAGCTTTTCAATTGCTTAATTTGAAAGCTTTTGATTCTATGAATGTTAGTCCTAGCTATATGACCATTTTAGAGGGCCTTGAAACTTATGCTTCTGGGCATCCATTCATTTTGGAAGTGATAGGTTCCTACTTGAATGGGAAAAGTACAGAAGAATGTGAATCTGCATTGCACCAGTATCAAAAAATTCCAAACGGGGACATAAAAAAGATCCTACAAGTAAGCTTTGATGCTTTGGAGAAATTTCAGCAGAATATGTTAATTCACATTGCACTTCACCTCAAAGAACAGGAACTGGCAATTGTTGAAGACATGCTTCATTGTAAATATGAAGTGTGCCCAAAAGATGTTACTAGAGTTTGTTTGAGGAGCATGACAAGCGGACACATCCATCCTGCCTTAAGTGATGGAAGCATGTTTTGGGATCCGGTTGAATTGCATATCAATTATCACAGCAGTGATGTATTTCTCCTCTTCTCTGGATGGTTCGTGATGTTTCCCAGGATTGCTCGCCTTCTTTGA 1572 0.3944 MQSPSRLIGPKAFRYSVFISFRGSDTRCGFSGFLNKDLIDGGFRTFFDDREIERGAQIRVKIPKAIEDSRIFIPVLSENYASSSFCLDELVKILEEFKKGNGRWIFPVFYYVNISDVKNQTGSYGKALAVHKNRVTPERLEKWTNALTSVADFRGCHMDRARGIYEFQYIYEIIQEVSKHVAYSIGLDHRVEKVMHCLTSGSDNDGVCIVGICGVPGIGKTTLARGVYHFHGSIEFDCCCFFDNVGEYLKKHGLVHLQQMLVSEIVGHHNSTMFESVDEGISTAIKHMLNQKKVFLILEDVHDSEVLKAIVKLTTCFGSGSKVIITAREKCFLELHGIKRIYEVERMNKVEAFQLLNLKAFDSMNVSPSYMTILEGLETYASGHPFILEVIGSYLNGKSTEECESALHQYQKIPNGDIKKILQVSFDALEKFQQNMLIHIALHLKEQELAIVEDMLHCKYEVCPKDVTRVCLRSMTSGHIHPALSDGSMFWDPVELHINYHSSDVFLLFSGWFVMFPRIARLL 523
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu08g01400 523 Gene3D - 171 338 IPR027417 -
Tsu08g01400 523 Pfam NB-ARC domain 189 429 IPR002182 GO:0043531
Tsu08g01400 523 Gene3D - 1 151 IPR035897 -
Tsu08g01400 523 Gene3D - 347 430 IPR042197 -
Tsu08g01400 523 ProSiteProfiles TIR domain profile. 13 181 IPR000157 GO:0007165
Tsu08g01400 523 SUPERFAMILY Toll/Interleukin receptor TIR domain 12 155 IPR035897 -
Tsu08g01400 523 Pfam TIR domain 15 204 IPR000157 GO:0007165
Tsu08g01400 523 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 182 439 IPR027417 -
Tsu08g01400 523 PANTHER RESISTANCE PROTEIN (TIR-NBS-LRR CLASS), PUTATIVE-RELATED 11 470 - -
Tsu08g01400 523 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 11 470 IPR044974 GO:0006952
Tsu08g01400 523 SMART till_3 14 153 IPR000157 GO:0007165
Tsu08g01400 523 PRINTS Disease resistance protein signature 209 224 - -
Tsu08g01400 523 PRINTS Disease resistance protein signature 381 395 - -
Tsu08g01400 523 PRINTS Disease resistance protein signature 288 302 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu08g01400 Tsu-Chr8 16319116 16321412 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu08g01400 210 457 WRKY Transcription Factor Family AT5G45050 30.709 2.37e-25 108
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu08g01400 - - mtr:MTR_8g039800 781.941