Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu08g01399 ATGGCGGTTTCACCTCGTTCGTCATCTCTATCTTATGATGTATTCATTAGCTTCAGAGGAGAAGATACTCGCTTAGGTTTTACTGCTTTTCTCTACAAGACTCTCTCTGACAGAGGAATCCGAACTTACTTTGACCACAACGACGACGCGGAGGAACCGATTATTAAGGCAATTGAAGAATCCAAGGTTTCGATTGTTGTTTTTTCTGAGAACTATGCTTCTTCCACTTATTGTCTCGATGAACTTGTTTCTATTATTGACTCTTAtaccaaaaagaagaagaacaacaacTGTTGTAGATTGGTTTTTCCGGTGTTTTATTATGTGGATCCTTCTCATGTGAGAAATCAGACTGGGGTTTATGAACAAGCACTGAACGTgcataagaaaaataagttcGATTCGGAGAAATTGATGAAATGGAAGATTGCTCTTAATCAAGCAGCTAACTTCTCTGGTTGCCATTTTAAACATGGGGATGGATATGAGTATGAGTTAATTGAGAGGATCGTAGATGTGGTCTCCAGTAAAATTGATTCTGCCCCTTATTTACGTGTTGCGGATCACCCAGTTGGTCTCAATTATCGAGTGCTAGAAGTAAACTGGCTTCTCAATGATCATGCTGCTGGATTCCATGGAGCTGGACTCAAGGTGCTTGGTATCTACGGCATGGGAGGAATGGGGAAGACAACCCTTGCTCGAGCTGTCTATAATTTCATTACCCCTCAATTTGACGCCTTTTATTTTCTAGAAGACGTGAGAGAAAATTCAGCGAAACATGGCTTAGTGCATCTTCAACAGACCCTTCTCACTGGTATAGCTGTTGGACAGAAGAAGGACCTTCAATTAGCAAGTGTCAGTGAAGGAGTTCGGCTGTTAAAGCATATGCTCCAGCGCAAGAAGGTTCTTTTGGTTCTTGACGATGTTAATAGCTCAGATCAGTTGCAAGCTATTCTTGGAGGGGGCATCGACTCTTTTGGTTATGGCAGCACCATCATCATTACTACTAGGGACAAACTGTTTCTAACAACTAACGGAGTTGATACAACCTACAAGGTAGAGGCATTGACTAAGGACGAATCCCTAGAGTTGCTTTGTTGGAACGCTTTCAAGACCAACAAAATTTTTCCAGATTTTCTCGACCTATTAAACCGTGCATCAGCTTACGCATCTGGCATTCCTCTGGCTTTAGAGGTTATAGGCTCAAACCTGTATGGGAAAGGAGTAGAAGAATGGGAATCTGCACTATATTCCTATGAAAAGATTCCATCAAAAGATATCCAAACCATACTTAAGCAAACCTGCGATGCTTTGGATCAAGATCTTAGGCAAATTTTTCTTGACATCACATGTTTCTTTAAAGGATATGAACTCTCAGAGGTTGAATACCTACTCAGTGCTCATTACGGTTACTGCTTGGAACCTCACCATTTTGGAGTCTTGCTTCAAAAATCTCTCATCAAGATTGACGAGCACAATCGTGTGAAAATGCACGACTTGGTACAGGATATGGGCAGAGAAATCGTGAGACAGGAATCACCGGACCACCCTGGCAAACACAGTAGGCTATGGTTTACTAAGGATATCGTCGAAGTTTTAGAAAAAAACACAGGAACAAGTGAAATTCAAACCATCATTCTGGACTTCCCCAAATATGAAAAAGTGGTACAGTGGGATGGAAAAGCCTTCAAGAAGATGAAAGGCCTCCAGACACTTATTATTAGAAGTCTGTGTTTTGCTGAAGGTCCGAAGAGTCTTCCAAATAGTTTAAGAGTGCTGGAGTGGTGGGGATATCCTTCACAGTCTTTACCTTCTGATTTTTACCCCGAGAAACTAGCTGTTCTGAAGTTACCACATAGTTCCTTTGTGATGCCAGAGCTGTCCAAGTCAAAGAAGTTCGTAAATATGAcgcttttgaattttgatgaatgTAAATTTATAACACATATACCCGATGTATCTGGTGCCCCAAACTTAGAAAGATTGTCTCTTGTTTGTTGCAAGAATTTAGTTGAAATTCATGACTCGGTTGGATTCTTGGATAAACTTGAAATTCTGAATGTTGGGGGTTGCGGCAAGCTTCAGAATTTTCCACCCATCCAATTGACCTCTCTCCAACACCTCAATCTTTCCCATTGTTCAAGTCTTGTGAGTTTTCCCGAGATATTaggaaatatgaaaaatattacaaGTCTTTCTTTGGAGGACACTGCCATAAGAGAATTCCCATATTCAATTGGAAATCTTCCCCGACTTAAAAGTTTAGAACTGCACGGATGTGGAAAGCTTCTGTTACCAAGTAGCATTATCCTATTGTCAGAACTTGAGGAGTTGAGTATTTGGCGATGTGAAGGGTTGCAATCACACAAACAGGACAGAATTGTAGAAAAATTAATGGTTGCTTCAAACGTGAAGCATATTGATTTCTTGTCTTGCAATATATCAGATGAATTCATTCGAACAAGTCTTGCTTGGTTTTCCAATGTGGTAGAGTTAAACCTTTCAGCAAATAATTTTACAATTCTTCCAGCATGCATCAAAGAATGCCGCCTTTTGGCGATACTTATATTGGACTACTGCATGCATCTTCGAGAAATTGGAGGAATTCCACCTAATTTAGAAACATTCTCTGCAATACGATGCACATCCTTGAAAGATTTAGACCTCACAGATCTTATTGCGTCTACCAAAGTTTGTTGTTCTTTAAGAGAGCTTGTTTTAGATGATTGTGAAAATCTTCAAGAAATTAGAGGGATTCCACCCAGCATAGAACTTTTGTCCGCAAGAAACTGCAGATCCTTGACTACCTCATGcagaaaaatgttactaattcAGGTTCATGTTATTTTTgcttag 2856 0.3883 MAVSPRSSSLSYDVFISFRGEDTRLGFTAFLYKTLSDRGIRTYFDHNDDAEEPIIKAIEESKVSIVVFSENYASSTYCLDELVSIIDSYTKKKKNNNCCRLVFPVFYYVDPSHVRNQTGVYEQALNVHKKNKFDSEKLMKWKIALNQAANFSGCHFKHGDGYEYELIERIVDVVSSKIDSAPYLRVADHPVGLNYRVLEVNWLLNDHAAGFHGAGLKVLGIYGMGGMGKTTLARAVYNFITPQFDAFYFLEDVRENSAKHGLVHLQQTLLTGIAVGQKKDLQLASVSEGVRLLKHMLQRKKVLLVLDDVNSSDQLQAILGGGIDSFGYGSTIIITTRDKLFLTTNGVDTTYKVEALTKDESLELLCWNAFKTNKIFPDFLDLLNRASAYASGIPLALEVIGSNLYGKGVEEWESALYSYEKIPSKDIQTILKQTCDALDQDLRQIFLDITCFFKGYELSEVEYLLSAHYGYCLEPHHFGVLLQKSLIKIDEHNRVKMHDLVQDMGREIVRQESPDHPGKHSRLWFTKDIVEVLEKNTGTSEIQTIILDFPKYEKVVQWDGKAFKKMKGLQTLIIRSLCFAEGPKSLPNSLRVLEWWGYPSQSLPSDFYPEKLAVLKLPHSSFVMPELSKSKKFVNMTLLNFDECKFITHIPDVSGAPNLERLSLVCCKNLVEIHDSVGFLDKLEILNVGGCGKLQNFPPIQLTSLQHLNLSHCSSLVSFPEILGNMKNITSLSLEDTAIREFPYSIGNLPRLKSLELHGCGKLLLPSSIILLSELEELSIWRCEGLQSHKQDRIVEKLMVASNVKHIDFLSCNISDEFIRTSLAWFSNVVELNLSANNFTILPACIKECRLLAILILDYCMHLREIGGIPPNLETFSAIRCTSLKDLDLTDLIASTKVCCSLRELVLDDCENLQEIRGIPPSIELLSARNCRSLTTSCRKMLLIQVHVIFA 951
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu08g01399 951 SUPERFAMILY "Winged helix" DNA-binding domain 426 534 IPR036390 -
Tsu08g01399 951 PRINTS Disease resistance protein signature 218 233 - -
Tsu08g01399 951 PRINTS Disease resistance protein signature 700 716 - -
Tsu08g01399 951 PRINTS Disease resistance protein signature 296 310 - -
Tsu08g01399 951 PRINTS Disease resistance protein signature 390 404 - -
Tsu08g01399 951 SUPERFAMILY L domain-like 553 916 - -
Tsu08g01399 951 Gene3D - 6 183 IPR035897 -
Tsu08g01399 951 Gene3D - 192 347 IPR027417 -
Tsu08g01399 951 ProSiteProfiles TIR domain profile. 10 178 IPR000157 GO:0007165
Tsu08g01399 951 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 184 449 IPR027417 -
Tsu08g01399 951 Gene3D Ribonuclease Inhibitor 540 695 IPR032675 -
Tsu08g01399 951 Gene3D Ribonuclease Inhibitor 790 942 IPR032675 -
Tsu08g01399 951 PANTHER ARCHAEAL ATPASE 893 945 - -
Tsu08g01399 951 PANTHER ARCHAEAL ATPASE 22 885 - -
Tsu08g01399 951 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 893 945 IPR044974 GO:0006952
Tsu08g01399 951 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 22 885 IPR044974 GO:0006952
Tsu08g01399 951 Pfam NB-ARC domain 215 440 IPR002182 GO:0043531
Tsu08g01399 951 SUPERFAMILY Toll/Interleukin receptor TIR domain 6 153 IPR035897 -
Tsu08g01399 951 SMART AAA_5 215 359 IPR003593 -
Tsu08g01399 951 SMART till_3 11 151 IPR000157 GO:0007165
Tsu08g01399 951 Pfam TIR domain 12 176 IPR000157 GO:0007165
Tsu08g01399 951 Gene3D Ribonuclease Inhibitor 696 787 IPR032675 -
Tsu08g01399 951 Gene3D - 355 446 IPR042197 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu08g01399 Tsu-Chr8 16312417 16317596 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu08g01399 5 787 WRKY Transcription Factor Family AT4G12020 31.768 4.27e-83 292
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu08g01399 - - mtr:MTR_8g039870 1482.23