Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu08g01397 ATGATGCCGCCTGGGGAACTTGAAGCAAACCGTGGAAGCAATAACGAAATGGATGATGAAGAGATGGATGATTCATATAAAAGACCTATTTTCAGAGACATTAGACGCTATTTTTGTGAATATTGTGGCATCTTTAGGGTGCCTCGGTCACGCTCCATTCAAAACAAGAGACCGTATACATGTACTTTTGATGGTTGTCAGGCAAGTTACAGAAGAAAGGACCATTTGAATCGCCATCTTCTACAACATGAAGGGAAAATGTTTAAATGTCCAATTGAGAACTGCAACCGTAACTTTACATTCGAGGGAAACATGACAAGACATGTCAAGCAGTTTCATAACAAGGGTTCTTCTACCTCTATTGATGTTAAAATTCAGAAGCAGCATGTGTGTCCAGAAATTGGCTGTGGGAAGGTTTTCAAATTTGCATCAAAGCTAGAGAAGCTCAAAGATTCTCGTGTTAAGCTGGACTCAATAGAGACAGTGTGCTTATATCCCGGGTGTATGAAGCATTTTACTAGTATCCAGTGTCTTAGAGCACACACTAAATCCTGCCATCAGTATGTGACCTGTGAAACTTGTGGGGAAAATCAACTTGAGAAGAACATTAAAAGGCACTTCCGTAAGCATGAAAATAGTAGTTCGTCCGAGGTGTTTCATTGTGATTATAAGGGCTGTAGCTGCACCTTCTCAATTAAATCCAATCTTTCTAAGCATGTCAAGGCTATCCATTTGCAAGATAAACCCTTTTTGTGCGGCTTTCCGGATTGCGGCatgaaatttgcttataaacacGTGAGAGATAACCATGAAAAATCTGGTTCACATGTTTTTACCCTAGGGGATTTTGAAGAAACTGATGAACAATTCAGGTCAAGGAATAGGGAAGGGAGAAAGAGAAAGTGTCCTACAGTTGAAATGTTGATTAGGAAGAGAGTTGCTCCCCCAACTCAACTAGA 959 0.3973 MMPPGELEANRGSNNEMDDEEMDDSYKRPIFRDIRRYFCEYCGIFRVPRSRSIQNKRPYTCTFDGCQASYRRKDHLNRHLLQHEGKMFKCPIENCNRNFTFEGNMTRHVKQFHNKGSSTSIDVKIQKQHVCPEIGCGKVFKFASKLEKLKDSRVKLDSIETVCLYPGCMKHFTSIQCLRAHTKSCHQYVTCETCGENQLEKNIKRHFRKHENSSSSEVFHCDYKGCSCTFSIKSNLSKHVKAIHLQDKPFLCGFPDCGMKFAYKHVRDNHEKSGSHVFTLGDFEETDEQFRSRNREGRKRKCPTVEMLIRKRVAPPTQL 319
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu08g01397 319 SMART c2h2final6 88 113 IPR013087 -
Tsu08g01397 319 SMART c2h2final6 161 186 IPR013087 -
Tsu08g01397 319 SMART c2h2final6 250 276 IPR013087 -
Tsu08g01397 319 SMART c2h2final6 59 83 IPR013087 -
Tsu08g01397 319 SMART c2h2final6 189 210 IPR013087 -
Tsu08g01397 319 SMART c2h2final6 219 244 IPR013087 -
Tsu08g01397 319 ProSitePatterns Zinc finger C2H2 type domain signature. 61 83 IPR013087 -
Tsu08g01397 319 ProSitePatterns Zinc finger C2H2 type domain signature. 163 186 IPR013087 -
Tsu08g01397 319 ProSitePatterns Zinc finger C2H2 type domain signature. 221 244 IPR013087 -
Tsu08g01397 319 Pfam Zinc finger, C2H2 type 59 83 IPR013087 -
Tsu08g01397 319 ProSitePatterns Zinc finger C2H2 type domain signature. 252 276 IPR013087 -
Tsu08g01397 319 ProSiteProfiles Zinc finger C2H2 type domain profile. 59 88 IPR013087 -
Tsu08g01397 319 MobiDBLite consensus disorder prediction 1 24 - -
Tsu08g01397 319 Gene3D Classic Zinc Finger 84 124 - -
Tsu08g01397 319 SUPERFAMILY beta-beta-alpha zinc fingers 202 257 IPR036236 -
Tsu08g01397 319 PANTHER - 52 316 - -
Tsu08g01397 319 Gene3D Classic Zinc Finger 49 83 - -
Tsu08g01397 319 PANTHER ZINC FINGER PROTEIN 52 316 - -
Tsu08g01397 319 ProSitePatterns Zinc finger C2H2 type domain signature. 90 113 IPR013087 -
Tsu08g01397 319 SUPERFAMILY beta-beta-alpha zinc fingers 86 114 IPR036236 -
Tsu08g01397 319 ProSiteProfiles Zinc finger C2H2 type domain profile. 219 249 IPR013087 -
Tsu08g01397 319 Gene3D Classic Zinc Finger 214 295 - -
Tsu08g01397 319 ProSiteProfiles Zinc finger C2H2 type domain profile. 88 118 IPR013087 -
Tsu08g01397 319 SUPERFAMILY beta-beta-alpha zinc fingers 54 85 IPR036236 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu08g01397 Tsu-Chr8 16297644 16300946 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu08g01397 56 279 C2H2 Transcription Factor Family AT1G72050 48.000 7.64e-85 257
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Tsu08g01397 zf-C2H2 0.0039 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu08g01397 K09191 - gmx:100801812 409.838