Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu08g01396 ATGGAAACTAATCGCCGCGCAATCCGAACCTTAGTTTCAAAACTCAGCTCCGTTTCCGAACAAACACGAATCGAAGCACTTTGCGAGCTTCGGTTAATGTCAAAACAAGATCCACAAACCCGACCCATAATAACCGAATCGGGCGCAATCCCTTACTTAGCAGAAACTCTCTATTCATCTTCTCACCCTTCTCAAGAAAACGCCACCGCAACACTTCTTAATCTTTCTATAACAGAAAAAGAATCTATCATGTCCACGCGCGGTGTTCTCGACGCGCTTTCACATATAATTTCTCATCATTCTTCAACATCCGCCGCCGCCGCCGTTCAATCAGCTTCCGCCACGATTCACAGCCTTCTTTCGTCGGTGGATGATTATCGTACCGTCGTTGGATCTAAACGTGAAATTGTTTACGCGCTTGTTGATATTCTCCGTTGTCATAGATCATCACCGCCGAGAACGGTGAAAGATGCGTTGAAAGCGCTTTTCGCGATCGCGCTTCATCCTTTAAACCGTGCTACTATGATTCAATTCGGCGTTGTTCCGGCGCTTTTTTCTCTAATTGTTAACGACGGTAGAGTCGGAATAGTTGAAGACGCAACCGCGGTCATCGCACAGGTTGCCGGTTGTGAGGAAAGCGTTGAAGCTTTCCGGAAGGTTTCTGGTGTTGGAGTGCTTGCTGATCTGCTTGATCTTAATACTGGTTCTAGTATGAGGACGAGAGAAAATGCGGTGTCGGCGTTGCTTAATCTTGTCCGATGCGGCGGTGATGCGGTGGCCGGAGATGTTAGAGACGCCGTTGCTTTCGGTGCTTTGGACGGAATCGCTGATGTTAGAGATAAAGGGAGTGTTAAGGGGCAGAGTAAAGCTATGGAGTTGATGAGGGTGATGCTTGGTGGTGGTGATAGGAATGTCGTTTTGAACAGTGGTTCGTCGTTTGGTTCTTCTGTGATGAATGATGATAGTGGTACGTCGTTTTGA 981 0.474 METNRRAIRTLVSKLSSVSEQTRIEALCELRLMSKQDPQTRPIITESGAIPYLAETLYSSSHPSQENATATLLNLSITEKESIMSTRGVLDALSHIISHHSSTSAAAAVQSASATIHSLLSSVDDYRTVVGSKREIVYALVDILRCHRSSPPRTVKDALKALFAIALHPLNRATMIQFGVVPALFSLIVNDGRVGIVEDATAVIAQVAGCEESVEAFRKVSGVGVLADLLDLNTGSSMRTRENAVSALLNLVRCGGDAVAGDVRDAVAFGALDGIADVRDKGSVKGQSKAMELMRVMLGGGDRNVVLNSGSSFGSSVMNDDSGTSF 326
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu08g01396 326 PANTHER U BOX DOMAIN-CONTAINING 2 304 - -
Tsu08g01396 326 Gene3D - 147 298 IPR011989 -
Tsu08g01396 326 Gene3D - 2 146 IPR011989 -
Tsu08g01396 326 Pfam Armadillo/beta-catenin-like repeat 38 76 IPR000225 GO:0005515
Tsu08g01396 326 PANTHER ARM REPEAT SUPERFAMILY PROTEIN 2 304 - -
Tsu08g01396 326 SMART arm_5 37 77 IPR000225 GO:0005515
Tsu08g01396 326 SMART arm_5 168 209 IPR000225 GO:0005515
Tsu08g01396 326 SMART arm_5 122 167 IPR000225 GO:0005515
Tsu08g01396 326 SMART arm_5 210 253 IPR000225 GO:0005515
Tsu08g01396 326 SUPERFAMILY ARM repeat 6 297 IPR016024 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu08g01396 8 294 U-box Gene Family AT2G23140 32.639 2.91e-30 119
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu08g01396 - - mtr:MTR_8g039560 511.146