Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu08g01392 ATGGCAGTTGAATTGGTCGGTGGTGCTCTTCTTTCTGCTTTCCTTCAGGTCACATTCGAAAAGCTTGCTTCTGCTGGAATTGTAGACTACTTTCGAGGAAGAAAACTCAATGAGATGCTTTTGAAGAAACTCAACATCACGCTTCTCACCATCAATGCTGTGGTCGATGATGCAGAATTGatgcaaataaaaaatcaacctGTTAAAGTATGGCTTGATGCTGTCAAAGATGCTGTGTTAGAAGCAGAGGATCTCATGGATGAAATTGACATTGAAGTTACAAGATGCAAGCTGGAAGCGGAATCACAAACCAGAAGTACTACCAGCAAGGTATGGAATTTCTTCAGTCCTTCTTCCAGTTCATTTGACAAAGAAATTGAATTAAAGATGCAAGAAGTTCTTGACAACCTAGAGTATCTTGCTAGCAAAAAGGATATACTAGATCTGAAAAAGAGTAGTGGTTTTGGTGTTGGATCAAGTAGCCATGTTTCAAAAATATTGCCATCAACATCTTTGCCGGTTGATTCTATTATTTATGGTAGAGATATTGAGAAGGAGGTTATCTTTAATTGGATGACATCTGACACTAATATTCATAACAATCAACTGTCAATTGTTTCTATAGTTGGTATGGGAGGGATGGGTAAGACCACCCTTGCCAAACATCTATACAATGACCCAAAGATAGAGGTTATATTTGATGTCAAAGCTTGGATCTCTGTGTCACAAGAATTTAATGTTTTCAAACTAACAAGATCTATTCTTGAGGGTATCATTGGATCAACGGATGATAGTAGGGACTTAAATATGGTCCAAGAAAGGTTGAAGGAAAAGCTGTCTGGAAAGAGATTTCTGCTTGTCTTGGATGACATATGGAATGAAAACCATATGCAATGGGAAGCTTTGCAGACACCTTTTAATTATGGGGCGCAAGGAAGCAAAATTCTTGTCACTACGCGCAGTCTAAAAGTTGTTTCAATCATTCAAACAAATAAAGAGATTCGACTAAAGCAATTAGAAAATGAACATTGCTGGCAATTATTTTCCAAACATGCTTTCCAAGATGAAAATCCTCAAATAGACCCCGACTCAAAGAAGATTGCTAAAATGATAATGGAAAAATGTCAAGGATTGCCTCTAGCCTTGAAAACAATTGGAAGTCTCTTATACACAAAATCATCTTTTGTAGAGTGGGAAAGTATATTGGCAAGTGAGATATGGGAATTATCAGAAGATGAGTGCAACATCATCCCCGCTTTAATGTTGAGCTATCACCACCTTCCTTCTCCTCTTAAGAGATGTTTTGCTTATTGTGCCTTATTCCCTAAAAATTATGTGTTTGAAAAAGACATATTTAATTCTATTGTGGTTGGCTGA 1377 0.3682 MAVELVGGALLSAFLQVTFEKLASAGIVDYFRGRKLNEMLLKKLNITLLTINAVVDDAELMQIKNQPVKVWLDAVKDAVLEAEDLMDEIDIEVTRCKLEAESQTRSTTSKVWNFFSPSSSSFDKEIELKMQEVLDNLEYLASKKDILDLKKSSGFGVGSSSHVSKILPSTSLPVDSIIYGRDIEKEVIFNWMTSDTNIHNNQLSIVSIVGMGGMGKTTLAKHLYNDPKIEVIFDVKAWISVSQEFNVFKLTRSILEGIIGSTDDSRDLNMVQERLKEKLSGKRFLLVLDDIWNENHMQWEALQTPFNYGAQGSKILVTTRSLKVVSIIQTNKEIRLKQLENEHCWQLFSKHAFQDENPQIDPDSKKIAKMIMEKCQGLPLALKTIGSLLYTKSSFVEWESILASEIWELSEDECNIIPALMLSYHHLPSPLKRCFAYCALFPKNYVFEKDIFNSIVVG 458
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu08g01392 458 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 161 438 IPR027417 -
Tsu08g01392 458 CDD AAA 179 291 - -
Tsu08g01392 458 PANTHER OS05G0414200 PROTEIN 13 450 - -
Tsu08g01392 458 Pfam NB-ARC domain 200 403 IPR002182 GO:0043531
Tsu08g01392 458 Gene3D - 16 129 - -
Tsu08g01392 458 Coils Coil 72 92 - -
Tsu08g01392 458 Pfam Rx N-terminal domain 11 103 IPR041118 -
Tsu08g01392 458 PRINTS Disease resistance protein signature 205 220 - -
Tsu08g01392 458 PRINTS Disease resistance protein signature 278 292 - -
Tsu08g01392 458 PRINTS Disease resistance protein signature 375 389 - -
Tsu08g01392 458 Gene3D - 338 427 IPR042197 -
Tsu08g01392 458 Gene3D - 159 335 IPR027417 -
Tsu08g01392 458 PANTHER DISEASE RESISTANCE PROTEIN RP 13 450 IPR044974 GO:0006952
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu08g01392 Tsu-Chr8 16253723 16255099 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu08g01392 178 399 WRKY Transcription Factor Family AT5G45050 27.313 4.53e-10 60.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu08g01392 - - gmx:100781012 558.91