Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu08g01390 ATGCAAGGTTTAGTGAATGCATTGGAACCTTTGCTTAGACGAGTCATCCAACGGGAGGTCGACAACGCCCTACAGAAAATAAGGAGGTATGAAGTGTTCTTAAGTTTCAGAGGCGAAGACACACGTTATTCCTTCACTTCACATCTATATGCTTCACTTCAAAACAACGGAATTATCGTTTTTAAGGACGATGATTCACTTCAAAGAGGAGATCTCATTTCAACATCACTACTGGAAGCAATCGCACAATCTAAAATTGCTGTTATCATTTTCTCAAAGAATTATTCAGATTCGCGATGGTGTATGGATGAGTTGATGAAAATCATAGAGTGTCAAAGAGCCATAGGACAAACGGTACTGCCAGTGTTCTATGATGTTGATCCCTCCGAGGTACGTCACCAAACTGGTGAATTTGGAAAAGCTTTTCAGAGTCTCTTGAGTAGGATTTCAAAAAACGAAGAGATGTCTCTGAAATGGAGAGATGCTCTTCGTGAGGCTGCTTCCCTTGCTGGCTTTGTAGTTCTAAATTTCagGAATGAAAGGGAGGCTATCGACCATGTTGTAGAAAAGGTTACTCTTTTGCTTGATAAGACAGACTTATTTGTTGCTGATAATCCAGTGGGAGTCGAATCTCGAGTGCAGGATACAATTCAACTTCTAGACATCCAACAATCAAATGATGTTCTATTACTAGGGATGTGGGGTATGGGGGGAACCGGTAAAACAACCCTTGCAAAAGCCGTTTACAACAAAATTGGCCGTGATTTTGAAGGTAGAATTTTCCTTGCAAATATTAGGGAAACTTGGGAGCAAATTGCAGGAAAAGCGTCATTACAAGAACAACTTCTGTTTGATAtcttcaaagaaaaaacaaccaAGATACAGAGCATTGAGTCTGGGAAAATTACATTAAAGGAAAGACTTTGTAATAAAAGAGTACTTCTTGTACTTGATGATGTGAGTAGTTTAGACCAACTAAATGCATTGTGTGGAAGTCGCAAATGGTTTGGTTCGGGGAGTAGAATAATCATCACAACTAGAGATAAAAATATACTTAGAGGGAATAGAGTTGACAAAGTATGCACAATAAAAGAATTGAATGAAAATGAGTCAATCGAGCTTTTTAGTTGGAATGCATTCAAGCAAGCGAGTCCTAAAAAAGATTTTTCTGAAATATCTAGAAAAATTGTTGAGTACTCTGGAGGATTGCCACTAGCTCTGGATGTCCTTGGTTCCTATTTGTTTGACAGGGGAGTAGCAGATTGGAAAAGTGTAATGGAGAAAATCAAAGTAATTCCCAATGATCAAGTACAACAGAAGTTAAAAATAAGCTATGATGGTTTGAATGACACCGAGAAAGAAATATTCCTTGACATAGCTTGCTTCTTTATTGGGATGGACCGAAATGATGTAATACTCATATTGAATGACTGTGGACTTTTTGCAGAAATCGGAATAAGTGTCCTTGTTGAGAGAAGCCTTGTAACTGTCGATGATAATAACAAGCTTGGAATGCACGATTTGTTACGAGATATGGGAAGAGAAATCATTCGTGAACAATCACCGAAGGAGCCTGAGGAGCGTAGCAGGTTATGGTTTCAAAAAGATGTGCTTGGTATTTTATTTGATGGAACTGGAACAAAAGCAGTTGAAGGACTAACTTTGAAGTTGCCAATAGATAGTTCAAAATGTTTTAATACAAAAGCATTTAAGAAGATGAAGAGACTCAGATTACTTCAACTTGCTAGCGTAAGACTTGATGGAGatttcaaacatatttcaagacATCTAAGATGGCTGTGTTGGAATGGATTTCCTTTAACAAGCATACCTTCAGACTTTTATCAAGGAAATTTAGTTTCAATTGAATTAGAAAACAGCAATGTCAGACGTCTGTGGAGAGAGACCCAAAGGTTGGAGATGCTGAGAATCCTAAACCTTAGTCATTCTCATGATCTGATACAGACCCCAGACTTCTCAAATTTGCCTAATCTTGAAAAGCTAGTACTCGCAGATTGTAAAATGTTGTCTGAGATTTCCAATAGTATTGGAGATCTCAAAAAAATTCTTCTGATCAATTTGGAAGACTGTATTAGCCTCCGTAGCCTTCCGAGAAGCATCTATAAGTTGAAATCGTTGAAAACTCTCAATATATCCGGTTGTTCAATGATTGACAAGTTAGAAGATGACTTGGAACAGATGGACTCCTTAACCAACCTGATTGCAAATAACACTGCAATAACAAGAGTACCATTTTCAATAGTAAGGTCAAAAAGCATTGGATATATTTGTCTGTGCGGTTATGAAGGATTCTCACATGACGTGTTTCCATCTATAATTTGGTCTTGGATGTCACCAACAAATAATCTCCCATCCCCATTTCAAACATCTAATATCATGTCATCTGTTGTTCCTTTAGATGTATCACACAGTAGTTCCCACTCACTATCATCGATTTCCATGTACCTTTCAAGTCTTCGAAGTCTTTGGGTGGAGTGCAGCTCAGAACTTCAACTTTCTCAGGATGCAGCAATAATTTTGGATGCCTTAAATGCCACAAATTATAAGGAGTTGGAACCATCTGCAACTACGTCACAAGCATCAAATATGACTACTACTGCAAAAGTATCAAAGCATTCCCCGAAGTCTCTTATGATTCAAATCGGAATGAATTGCCAAGTCACTAATATTCTGAAAGAGATAATTTTACAGAATATGGATGTCAGTGGGACTGCTGGTTGTTTCCTCCCCGGTGATAGATATCCAAATTGGGTTACCTTTAATTCTGAAGGATCTTATGTAACTTTTCGAGTCCCTCAAGTGGAAGGGCGTAACTTGAAGACAATAATGTGCATTGTCCATAGTACTTCAACCCGAGATAACCTAACATCAAGTGGCCTTAAAAACATGTTGGTGAAAAATTACACAAAGGCTACCATTCAACTTTATAAGGGAGCGGCATTAATCTCCTCAGAAGATGAGGAGGGGCAGAGGGTAGTATCGAGTATAGAACCTGGTAACAAAGtggaggttgttgttgttttcgAGAATGGTTTCATTACGAAGAAGACAACAGTTTATCTCGTATATGATGAACCCATTGACAGAACTCTGAATCCATATCATTTTCCAGATTTGAATGTCAGTTCTTGCagtgatgatgaaaatgaatgCATTGGTAAGAGGATCTCTACTCAAGAGGAGTCCACTGATGATTTCAATCAAaacagaaagaagaaaaatcaattgGAGTGA 3255 0.3705 MQGLVNALEPLLRRVIQREVDNALQKIRRYEVFLSFRGEDTRYSFTSHLYASLQNNGIIVFKDDDSLQRGDLISTSLLEAIAQSKIAVIIFSKNYSDSRWCMDELMKIIECQRAIGQTVLPVFYDVDPSEVRHQTGEFGKAFQSLLSRISKNEEMSLKWRDALREAASLAGFVVLNFRNEREAIDHVVEKVTLLLDKTDLFVADNPVGVESRVQDTIQLLDIQQSNDVLLLGMWGMGGTGKTTLAKAVYNKIGRDFEGRIFLANIRETWEQIAGKASLQEQLLFDIFKEKTTKIQSIESGKITLKERLCNKRVLLVLDDVSSLDQLNALCGSRKWFGSGSRIIITTRDKNILRGNRVDKVCTIKELNENESIELFSWNAFKQASPKKDFSEISRKIVEYSGGLPLALDVLGSYLFDRGVADWKSVMEKIKVIPNDQVQQKLKISYDGLNDTEKEIFLDIACFFIGMDRNDVILILNDCGLFAEIGISVLVERSLVTVDDNNKLGMHDLLRDMGREIIREQSPKEPEERSRLWFQKDVLGILFDGTGTKAVEGLTLKLPIDSSKCFNTKAFKKMKRLRLLQLASVRLDGDFKHISRHLRWLCWNGFPLTSIPSDFYQGNLVSIELENSNVRRLWRETQRLEMLRILNLSHSHDLIQTPDFSNLPNLEKLVLADCKMLSEISNSIGDLKKILLINLEDCISLRSLPRSIYKLKSLKTLNISGCSMIDKLEDDLEQMDSLTNLIANNTAITRVPFSIVRSKSIGYICLCGYEGFSHDVFPSIIWSWMSPTNNLPSPFQTSNIMSSVVPLDVSHSSSHSLSSISMYLSSLRSLWVECSSELQLSQDAAIILDALNATNYKELEPSATTSQASNMTTTAKVSKHSPKSLMIQIGMNCQVTNILKEIILQNMDVSGTAGCFLPGDRYPNWVTFNSEGSYVTFRVPQVEGRNLKTIMCIVHSTSTRDNLTSSGLKNMLVKNYTKATIQLYKGAALISSEDEEGQRVVSSIEPGNKVEVVVVFENGFITKKTTVYLVYDEPIDRTLNPYHFPDLNVSSCSDDENECIGKRISTQEESTDDFNQNRKKKNQLE 1084
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu08g01390 1084 Gene3D - 197 360 IPR027417 -
Tsu08g01390 1084 PRINTS Disease resistance protein signature 708 724 - -
Tsu08g01390 1084 PRINTS Disease resistance protein signature 400 414 - -
Tsu08g01390 1084 PRINTS Disease resistance protein signature 230 245 - -
Tsu08g01390 1084 PRINTS Disease resistance protein signature 307 321 - -
Tsu08g01390 1084 SUPERFAMILY L domain-like 555 838 - -
Tsu08g01390 1084 Pfam TIR domain 30 191 IPR000157 GO:0007165
Tsu08g01390 1084 SMART AAA_5 227 367 IPR003593 -
Tsu08g01390 1084 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 194 459 IPR027417 -
Tsu08g01390 1084 Gene3D - 27 196 IPR035897 -
Tsu08g01390 1084 ProSiteProfiles TIR domain profile. 28 195 IPR000157 GO:0007165
Tsu08g01390 1084 PANTHER RCT1-LIKE RESISTANCE PROTEIN, PUTATIVE-RELATED 38 1030 - -
Tsu08g01390 1084 SMART till_3 29 169 IPR000157 GO:0007165
Tsu08g01390 1084 Gene3D - 365 449 IPR042197 -
Tsu08g01390 1084 Gene3D Ribonuclease Inhibitor 554 873 IPR032675 -
Tsu08g01390 1084 MobiDBLite consensus disorder prediction 1062 1084 - -
Tsu08g01390 1084 Pfam NB-ARC domain 211 435 IPR002182 GO:0043531
Tsu08g01390 1084 SUPERFAMILY Toll/Interleukin receptor TIR domain 28 172 IPR035897 -
Tsu08g01390 1084 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 38 1030 IPR044974 GO:0006952
Tsu08g01390 1084 SUPERFAMILY "Winged helix" DNA-binding domain 436 539 IPR036390 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu08g01390 Tsu-Chr8 16240216 16245348 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu08g01390 28 754 WRKY Transcription Factor Family AT4G12020 29.987 1.03e-90 318
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu08g01390 - - cam:101494533 1460.28