Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu08g01382 ATGTTAGGCTTAAGAGACTTAGTTCTCATAGCTCAAACTCCTTCATCTCTTCAAAACCAACAAAACCAACCCATTTCATCAGATCATCATCCCAACCATCCCTTACCTTCATCATCAGCTCTAAGTGTTGGTCTTGGAATTTTCCCTCTCATAACTACTACTACTCACtctcatcatcaaaatcaaaaccaaaataatgATACTAATATTCATCAAGACTCAAACTTTTGGAATCTCAAGATGTGTCAACCACaacaagtgatgatgatgaattctACAAGAAAAAgggttgaagaaaaagaagatgaaaagattaaaactttGGCGAGGGAAGAAAATATTAATGGTGATGGTGAGTTTAAGGTGTGTTTGGATTGTGGAAACAGAGCTAAGAAAGATTGTAGTTTTCAAAGATGTAGGACTTGTTGTAAAGGTCGTGGTTTTGATTGTAGAACTCACGTGAAGAGCACGTGGGTACCGGCTTCGTTGCGCCGTTACCGGAAGGCTGAAGGTGGTGGTGACAGTGGTGGCGTTTCTTCTGGTACTAAGAGGCAGAGGATTTTGGTTTCATCATCACATAATGCTGCTGCTACTTCTCGTAGTTCTAGTTCCAATGCTGCTACAAGAAGCTTAAGCTTAGATATTACTAGCTCTTGTCACCAAgATGCTAGCTTCAAACAATCTTTGCCGCGTTATGTTCGTGCACCTGCTGTTTTCAAGTGCCATAGAGTTTCTGCTATCGGCAATggtgaagatgaacttgcttaTTTGGCCACGGTGAATATTAGTGGTCATGTCTTCAAAGGGTTTCTTTATGATCATGGTATTGATGCAAAAAATGAAACAATGCCTTGTGTTTCAGAACTTCAACTTGGAAGTAATGGCAGTGGAAAGAGTTATAAGGAATGTTCTTCTTCTGCAATTGAGGTTCCAACTAGTGCATATCCTGCATCTGCTTGCTAA 963 0.3624 MLGLRDLVLIAQTPSSLQNQQNQPISSDHHPNHPLPSSSALSVGLGIFPLITTTTHSHHQNQNQNNDTNIHQDSNFWNLKMCQPQQVMMMNSTRKRVEEKEDEKIKTLAREENINGDGEFKVCLDCGNRAKKDCSFQRCRTCCKGRGFDCRTHVKSTWVPASLRRYRKAEGGGDSGGVSSGTKRQRILVSSSHNAAATSRSSSSNAATRSLSLDITSSCHQDASFKQSLPRYVRAPAVFKCHRVSAIGNGEDELAYLATVNISGHVFKGFLYDHGIDAKNETMPCVSELQLGSNGSGKSYKECSSSAIEVPTSAYPASAC 320
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu08g01382 320 Coils Coil 317 320 - -
Tsu08g01382 320 MobiDBLite consensus disorder prediction 16 39 - -
Tsu08g01382 320 Pfam Domain of unknown function (DUF702) 122 277 - -
Tsu08g01382 320 PANTHER LRP1 CARBOXY-TERMINAL DOMAIN PROTEIN 1 320 - -
Tsu08g01382 320 MobiDBLite consensus disorder prediction 178 203 - -
Tsu08g01382 320 TIGRFAM LRP1_Cterm: LRP1 C-terminal domain 229 276 IPR006511 -
Tsu08g01382 320 TIGRFAM put_zinc_LRP1: putative zinc finger domain, LRP1 type 122 163 IPR006510 -
Tsu08g01382 320 MobiDBLite consensus disorder prediction 168 203 - -
Tsu08g01382 320 PANTHER PROTEIN LATERAL ROOT PRIMORDIUM 1 1 320 IPR007818 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu08g01382 Tsu-Chr8 16066163 16067891 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu08g01382 1 315 C2H2 Transcription Factor Family AT5G12330 37.771 1.17e-48 166
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SRS Tsu08g01382 DUF702 9.9e-52 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu08g01382 - - gmx:100777812 366.696