Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu08g01361 ATGATGTACAATGACCCTCATAACCCTCAGCACCAGCACCAGTTTCAACAGCAACAGCAACATCCACAACAAcagcaacagcagcagcagcattTTCACCATCAGCAACAGCCAGGTCCCGAATTCCACCGTGGACCTCCGCCGCCGATGCCCCAGCAGCCTCCGCCTATGCTGCGGCAGCCTTCTGCTTCGTCCAGTACCATCCCCCCTGAGTTTCACCATCCTGGACCTGGTGGTCCCCCTGGTCCTCCTCCTCATTACGATGTTCATAATGATATCCATGGTGCAAAAAGAATGAGAAAGCTCACTCAAAGGAAGGCAGTTGATTATACGAGCACAGTTGTGCGCTATATGCAGATTCGCATGTCGCAGCGTGATTCAAGAGATAGGACAGTACTGCAACCTACCCCAGCAGCAGCGATTGATATGTTGCCAGCAGCTGGCTATTCAGACAATCCATCCACAAGCTTTGCTGCTAAATTTGTTCATACATCTCTAAATAAAAATCGTTGTCCTATTAACCGTGTTCTTTGGACTCCTACAGGTCGGCGTCTTATTACTGGCTCACAGACCGGGGAATTTACACTTTGGAATGGACAgtcttttaattttgaaatgatTCTTCAGGCTCATGATCAAGCAATCAGATCCATGGTCTGGAGTCACAATGACAATTGGATGGTCTCTGGGGATGATGGGGGTGCAATAAaGTATTGGCAGAACAACATGAACAATGTTAAAGCTAACAAATCTGCTCATAAAGAATCAGTTCGTGACTTAAgtttctgtaGGACAGATTTGAAGTTCTGTTCGTGTTCTGATGATACCACAGTTAAAGTTTGGGATTTCGCACGCTGTCAAGAAGAGTGTTCATTAACCGGCCATGGTTGGGATGTGAAGAGTGTTGATTGGCATCCAACAAAATCTCTCTTAGTATCAGGTGGGAAAGACAATCTTGTGAAACTTTGGGATGCTAAAAGTGGGAAAGAGCTTTGCTCGTTTCATGGACATAAAAACACTGTGCTTTGTGTGAAATGGAATCAAAATGGAAACTGGGTGTTAACGGCTTCTAAAGATCAAATAATAAAGCTCTATGACATAAGGGCAATGAAGGAGCTCGAATCATTCCGTGGACACCGGAAGGATGTTACTACTTTGGCTTGGCATCCATTCCATGAAGAGTACTTTGTCAGCGGGAGTTATGATGGTTCCATCTTCCATTGGCTTGTCGGGCATGATACTCCACAAATTGAAATTGCCGGCGCCCATGATAATAATGTGTGGGATCTTGCATGGCATCCTATTGGATACCTTCTGTGCAGTGGTAGCAGTGATCATACAACAAAGTTTTGGTCTAGAAACAGGCCGGGCGACAGTGCTCGTGATAGATATAACAATGGCATGCAAGGATATGCGGAGCAAAATCCTGTTGCTGGTCGTGTGGGTGGTAATTTTGCAATGCCTGAAGGCCCGGCAACTCCAGGGCCATTTGCCCCTCCTGGGCTGACTCGAAATGAGGGTACCATTCCAGGTGTTGGAGTTGCAATGCCCTTATCTATTCCTTCTCTTGATGGGCCTCAAGGGGAGCAGAAGCAACCCCATCCTGGTGCAATGGGTGCCCCTCCTCTTCCCCCGGGTCCACATCCCTCTCTTCTTAACCCCAACCAACAACCATTCCAACAGAATCCACAGCAGATTCCACAACATCAGCACCAGTCACTACCACAACAGATAGGATCTTTACCAGCGCCTACATCTCATCCGATGTCGATCCCAGGACCTATGGGGATGCAAGGTGCAATGAATCAGATGGGTCCTCCAATGCCACAAGGACATTATGGGGGCATGAATCAAATGCATTCAGGGCCTACAAGTGGAGGACCACCTCTGGGAGGTTTCCCAAACAATATGCAAGGGCCACCAAATACCAGTTATCCTCAAGGTGCTCCATTTAACAGACCACAAGGTGGACAAATGCCGATGATGCAAGGGTATAATCCTTACCAGTCTGGAAATCAACCCGGGATGCCTCCGAACGCACAACCAGGAGGACCACACTCTCAAATGCctcaataa 2076 0.4639 MMYNDPHNPQHQHQFQQQQQHPQQQQQQQQHFHHQQQPGPEFHRGPPPPMPQQPPPMLRQPSASSSTIPPEFHHPGPGGPPGPPPHYDVHNDIHGAKRMRKLTQRKAVDYTSTVVRYMQIRMSQRDSRDRTVLQPTPAAAIDMLPAAGYSDNPSTSFAAKFVHTSLNKNRCPINRVLWTPTGRRLITGSQTGEFTLWNGQSFNFEMILQAHDQAIRSMVWSHNDNWMVSGDDGGAIKYWQNNMNNVKANKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEECSLTGHGWDVKSVDWHPTKSLLVSGGKDNLVKLWDAKSGKELCSFHGHKNTVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKELESFRGHRKDVTTLAWHPFHEEYFVSGSYDGSIFHWLVGHDTPQIEIAGAHDNNVWDLAWHPIGYLLCSGSSDHTTKFWSRNRPGDSARDRYNNGMQGYAEQNPVAGRVGGNFAMPEGPATPGPFAPPGLTRNEGTIPGVGVAMPLSIPSLDGPQGEQKQPHPGAMGAPPLPPGPHPSLLNPNQQPFQQNPQQIPQHQHQSLPQQIGSLPAPTSHPMSIPGPMGMQGAMNQMGPPMPQGHYGGMNQMHSGPTSGGPPLGGFPNNMQGPPNTSYPQGAPFNRPQGGQMPMMQGYNPYQSGNQPGMPPNAQPGGPHSQMPQ 691
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu08g01361 691 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 250 282 - -
Tsu08g01361 691 ProSiteProfiles Trp-Asp (WD) repeats profile. 208 240 IPR001680 GO:0005515
Tsu08g01361 691 Gene3D - 324 466 IPR015943 GO:0005515
Tsu08g01361 691 Pfam WD domain, G-beta repeat 290 324 IPR001680 GO:0005515
Tsu08g01361 691 Pfam WD domain, G-beta repeat 251 282 IPR001680 GO:0005515
Tsu08g01361 691 Pfam WD domain, G-beta repeat 328 366 IPR001680 GO:0005515
Tsu08g01361 691 Pfam WD domain, G-beta repeat 206 239 IPR001680 GO:0005515
Tsu08g01361 691 Pfam WD domain, G-beta repeat 422 452 IPR001680 GO:0005515
Tsu08g01361 691 Pfam WD domain, G-beta repeat 372 408 IPR001680 GO:0005515
Tsu08g01361 691 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 376 408 - -
Tsu08g01361 691 SMART WD40_4 412 452 IPR001680 GO:0005515
Tsu08g01361 691 SMART WD40_4 201 240 IPR001680 GO:0005515
Tsu08g01361 691 SMART WD40_4 285 324 IPR001680 GO:0005515
Tsu08g01361 691 SMART WD40_4 154 198 IPR001680 GO:0005515
Tsu08g01361 691 SMART WD40_4 243 282 IPR001680 GO:0005515
Tsu08g01361 691 SMART WD40_4 327 366 IPR001680 GO:0005515
Tsu08g01361 691 SMART WD40_4 369 409 IPR001680 GO:0005515
Tsu08g01361 691 MobiDBLite consensus disorder prediction 662 677 - -
Tsu08g01361 691 ProSitePatterns Trp-Asp (WD) repeats signature. 311 325 IPR019775 -
Tsu08g01361 691 ProSiteProfiles Trp-Asp (WD) repeats profile. 376 408 IPR001680 GO:0005515
Tsu08g01361 691 Gene3D - 115 323 IPR015943 GO:0005515
Tsu08g01361 691 MobiDBLite consensus disorder prediction 41 58 - -
Tsu08g01361 691 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 208 240 - -
Tsu08g01361 691 PANTHER WD40 REPEAT PROTEIN 86 569 IPR045245 GO:0031124
Tsu08g01361 691 SUPERFAMILY WD40 repeat-like 162 451 IPR036322 GO:0005515
Tsu08g01361 691 MobiDBLite consensus disorder prediction 1 36 - -
Tsu08g01361 691 MobiDBLite consensus disorder prediction 1 91 - -
Tsu08g01361 691 PRINTS G protein beta WD-40 repeat signature 311 325 IPR020472 -
Tsu08g01361 691 PRINTS G protein beta WD-40 repeat signature 439 453 IPR020472 -
Tsu08g01361 691 PRINTS G protein beta WD-40 repeat signature 269 283 IPR020472 -
Tsu08g01361 691 MobiDBLite consensus disorder prediction 517 591 - -
Tsu08g01361 691 ProSiteProfiles Trp-Asp (WD) repeats profile. 292 333 IPR001680 GO:0005515
Tsu08g01361 691 CDD WD40 170 452 - -
Tsu08g01361 691 MobiDBLite consensus disorder prediction 73 87 - -
Tsu08g01361 691 MobiDBLite consensus disorder prediction 619 691 - -
Tsu08g01361 691 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 292 329 - -
Tsu08g01361 691 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 420 452 - -
Tsu08g01361 691 MobiDBLite consensus disorder prediction 553 584 - -
Tsu08g01361 691 ProSiteProfiles Trp-Asp (WD) repeats profile. 250 282 IPR001680 GO:0005515
Tsu08g01361 691 ProSiteProfiles Trp-Asp (WD) repeats profile. 166 198 IPR001680 GO:0005515
Tsu08g01361 691 ProSiteProfiles Trp-Asp (WD) repeats profile. 334 375 IPR001680 GO:0005515
Tsu08g01361 691 MobiDBLite consensus disorder prediction 636 651 - -
Tsu08g01361 691 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 334 368 - -
Tsu08g01361 691 ProSiteProfiles Trp-Asp (WD) repeats profile. 420 452 IPR001680 GO:0005515
Tsu08g01361 691 MobiDBLite consensus disorder prediction 537 552 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu08g01361 210 440 Miscellaneous Gene Families AT5G08390 24.576 1.92e-21 97.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu08g01361 K15542 - gmx:100788493 1115.52