Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu08g01356 ATGACATCGGATGTTTGTGATTGGCCTTTGGAGTTTCTTAAAGATTACACTTCTATATGTGAAGATAATgaatatgtaaatgattttaCATTTCAAGTGCCACAACAAGAACCATTGCCTCAAGCCAATACCATTAATGAGGGGGATCCTTTTGAAGGACAAATATTTAACAATGATGATGAGGCTTATGAATTTTACTCTGTATTTGCTCGAAAAAATGGATTTTCGATTCGGCGTGATCACATTTACAAGTCTCGTAAAAATGAGTCCGAGGATAATCCATTAGGAGTTTATAAGAGAGAATTTGTTTGTCATCGAGCTGGTATTGTTAAACAACGCAAAGTTGATGACGTGGAAAGTCAGAGGAAACGAAAATCTTCAAGATGTAGTTGTAGTGCAAAGATGTTGGTTACTAAAAGAACAATTGGTTTTGAAGAACAATGGGTGGTTACACATTTCAGTAATGACCACAATCATGAGTTATTAGATGACAAGGAGGTCCAATTTCTTCCTGCTTATCGTAACATCTCAATCGTCGATCAAAATCGTATACATTTGTTATCAAAAGCTGGTTGTTCCGTGAGTCTCATAATGAGAGTGCTGGATGGTATTGGTCAAGAAAATGATGCTTCAAATGTTCTCAAATTATGCAAAAGTTTGAAAGATATGGATGACACCTTCAAATATGATTTCACAATAGATGAAAGCAACAAATTGGAGCATATTATTTGGGTATTTGGTGATTCAATTCGAGCATATGAAGCTTTTGGAGATGTGGTTGTTTTTGATACCACATATCGAATAAATCGTTATGATATGCCGCTTGGAATATGGGTTGGAGTTGATAATCATGgaaattcaattttctttggATGCGTTCTATTGCGAGATGAGAAGATTCCTTCCTTCAGATGGGCTTTTAAgAGTTTTCTAGCTTTTGTCAAAGGAAAGTATCCGCAAACAATTCTTACGGATCAAGATCTCGCACTTAAAGAAGCCATTGCATTGGAATTGCCAAACACAAAACATGCATTTTGCATATGGCATATTGTTGCAAAGTTGTCAAGTTGGTTTTCTTTTCCATTGGCTTCGAGATATAATGACTTTAAACATGAGTTTCACAGGGTGTATCATTTAGAATGTGCAGATGCTTTTGAACAAGAATGGAAATTAATGGTTGGTGTTGCTGTCAAAATTAGAAATCAAGCAGGAGAAGAGGCAAGAATGCGTCAAAAGTACCACAACCCTCTATTCAGAACAAGTTTTCCTATTGAGGAACATGTGGCATCTATTCTCACGCCATATGCATTTGAGTTGCTACAACATGAGATTGAGTTATCTACAAAATATGCAGCAACTCAAACAGCCCATGGCTATATTGTGCGACACCATACCAAAGTTGACGGAGGTCGTCTAGTAAGTTggaaagatgaagaagaatcaaTTTCTTGTTCTTGCAAAGAATTTCAGTTTTCTGGGGTATTATGCAGACATGCTATTCGAGTGCTacttgtaaaaaattatttttgccTCCCATCAAAATATCTTCCTTTTCGATGGAGAAAAGAAAGTTCATTGATCCCAAAATCTAGTCACATAATCAACCACAATGTCGGCTCCTATGTTGAGTTTAAGTCCCTAATTCAATGTTTGGAAGTTGAATCATTAAAGACAAAAGAGCGGGAACAAGTTGCTAATAAGGAGTTAGAGAAAGTCATCCGACAGATAAAAAGCATGCCTGAAAGTCAAGATAATTTGATTGATTTGGAACCCGATGTTCCAAATAATGATGGTTGTGAGGTTGAAAATCCCGTTGGTTCAAAAACGAAAGGTCGGCCAAAAAGATCAAGGCCTAAAGGAGGTGTTGAAGTTGCAAAGAAGCTTCGTTATTGTCACGTACCAAATTGTCGTGGAACTGATCATGACACACGGAATTGtcctaacaaaaataaaaatattgaagtaTTGCCTTCTCAATCTCCTATTAAGTAA 1992 0.3514 MTSDVCDWPLEFLKDYTSICEDNEYVNDFTFQVPQQEPLPQANTINEGDPFEGQIFNNDDEAYEFYSVFARKNGFSIRRDHIYKSRKNESEDNPLGVYKREFVCHRAGIVKQRKVDDVESQRKRKSSRCSCSAKMLVTKRTIGFEEQWVVTHFSNDHNHELLDDKEVQFLPAYRNISIVDQNRIHLLSKAGCSVSLIMRVLDGIGQENDASNVLKLCKSLKDMDDTFKYDFTIDESNKLEHIIWVFGDSIRAYEAFGDVVVFDTTYRINRYDMPLGIWVGVDNHGNSIFFGCVLLRDEKIPSFRWAFKSFLAFVKGKYPQTILTDQDLALKEAIALELPNTKHAFCIWHIVAKLSSWFSFPLASRYNDFKHEFHRVYHLECADAFEQEWKLMVGVAVKIRNQAGEEARMRQKYHNPLFRTSFPIEEHVASILTPYAFELLQHEIELSTKYAATQTAHGYIVRHHTKVDGGRLVSWKDEEESISCSCKEFQFSGVLCRHAIRVLLVKNYFCLPSKYLPFRWRKESSLIPKSSHIINHNVGSYVEFKSLIQCLEVESLKTKEREQVANKELEKVIRQIKSMPESQDNLIDLEPDVPNNDGCEVENPVGSKTKGRPKRSRPKGGVEVAKKLRYCHVPNCRGTDHDTRNCPNKNKNIEVLPSQSPIK 663
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu08g01356 663 PANTHER FAR1 DNA BINDING DOMAIN, ZINC FINGER, SWIM-TYPE, MULE TRANSPOSASE DOMAIN, FHY3/FAR1 FAMILY-RELATED 49 201 - -
Tsu08g01356 663 PANTHER FAR1 DNA BINDING DOMAIN, ZINC FINGER, SWIM-TYPE, MULE TRANSPOSASE DOMAIN, FHY3/FAR1 FAMILY-RELATED 398 594 - -
Tsu08g01356 663 Pfam FAR1 DNA-binding domain 64 162 IPR004330 -
Tsu08g01356 663 PANTHER FAR1 DNA BINDING DOMAIN, ZINC FINGER, SWIM-TYPE, MULE TRANSPOSASE DOMAIN, FHY3/FAR1 FAMILY-RELATED 210 394 - -
Tsu08g01356 663 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 49 201 IPR031052 GO:0006355
Tsu08g01356 663 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 210 394 IPR031052 GO:0006355
Tsu08g01356 663 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 398 594 IPR031052 GO:0006355
Tsu08g01356 663 SMART 26again6 482 509 IPR006564 GO:0008270
Tsu08g01356 663 MobiDBLite consensus disorder prediction 639 663 - -
Tsu08g01356 663 MobiDBLite consensus disorder prediction 649 663 - -
Tsu08g01356 663 Coils Coil 559 579 - -
Tsu08g01356 663 Pfam SWIM zinc finger 473 507 IPR007527 GO:0008270
Tsu08g01356 663 Pfam MULE transposase domain 259 352 IPR018289 -
Tsu08g01356 663 ProSiteProfiles Zinc finger SWIM-type profile. 471 507 IPR007527 GO:0008270
Tsu08g01356 663 MobiDBLite consensus disorder prediction 596 623 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu08g01356 Tsu-Chr8 15678279 15681897 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Tsu08g01356 FAR1 3.2e-20 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu08g01356 - - var:108339217 753.051