Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu08g01350 ATGACTCCTTCACCTCTAAGGTTTTTCGTGGTTGGTCATGACCCTGCTTTCCTTATTTCCATTATGAatgaatatactaaacatgGTCATAAAgTTGGCATATTTGCTGAAATTTCTTATCCGTGGAATATTTTGAAGGATGGCAATGATTGTATTGATGTAATCTTAATCGATGCTCAAATGCAAGACCCGAAACGCTATGATTTTGTCGAATATgttaagcaacaaaacaaagtTGCTATCTGTTTGATGTCTGATGATGTATCAGTCAATGCAATGGATAAGGCTTATGAAAATGGAGCTGATGCCATTTGTGATAAATCTATCATTGAGAATTGTATTACTCAGATGTGGTTTGAAGTTATAAAGAAGAGAAATGGAAATTCTGAAACCTCAAAGGTAAAAGAAGttcagaagaagaaaagggtgagagataatattaaagaaaatgCACCAATAGTAACAAATGGTACTTGTGTTGTTGAAAAGTACGATATTGATAATTATCAacagaagaagaataagaacgTATGGCAATGGACAACAGAACTAGATGAACAACTTTCTAAAGTTGTGGAACAACTTGGTGGCCTTGATAAGGCAAAGCCAAAAAAGATTTTGGAACAAATGAATGTTCGTGGTTTGACAACAGCACATCTGTCTAGTCGCATACAgAGATTAAAGGCAAAATTGAAACGTGAAGTTGATAATTCAGTATCAAAAGAGACTTCAGTTATACTACAAAGTAACAACAATGGTCTtccaaaaaataacaataatggTTTCTTCAGTATGTTAGAACGTGGAAATTCCCCCCAACCAATACAAGAACAAAACCTTTTATCAGAAAGTTCACACCTGAGCGGTGAAGTTGGCCAAGAAGGCGGTGAAGTTCATCATCGGTCAGAAGAGATGTTTCCGAATTTATCAACAATATCACTGAGTCTTGATGGTGGTACATTGGGTTCAACTAAAATGCCAAAAGATGGAAGgaaaaaatcaaaaccgaatGAAGGCGATGAAGTTCATCGGTCAATGTCACAAGAGAGGTCACTtaacaataatgataataatcaAGATATCAACATTGCCGATAATTCATTGTCATCATTAACATTAACACCGAGTCTTGAAGTTGCCCAACCAATACCAGAACAGAACCATTCAGTTAATTATCAACATGTGAATGACAACTTCCAATGTTATCCTCAGGAGCCGTTGTCAACCGATGACTATGACTATTATGTTGATCAGCAATTTCCACTAGTTTTTAGATGA 1278 0.3216 MTPSPLRFFVVGHDPAFLISIMNEYTKHGHKVGIFAEISYPWNILKDGNDCIDVILIDAQMQDPKRYDFVEYVKQQNKVAICLMSDDVSVNAMDKAYENGADAICDKSIIENCITQMWFEVIKKRNGNSETSKVKEVQKKKRVRDNIKENAPIVTNGTCVVEKYDIDNYQQKKNKNVWQWTTELDEQLSKVVEQLGGLDKAKPKKILEQMNVRGLTTAHLSSRIQRLKAKLKREVDNSVSKETSVILQSNNNGLPKNNNNGFFSMLERGNSPQPIQEQNLLSESSHLSGEVGQEGGEVHHRSEEMFPNLSTISLSLDGGTLGSTKMPKDGRKKSKPNEGDEVHRSMSQERSLNNNDNNQDINIADNSLSSLTLTPSLEVAQPIPEQNHSVNYQHVNDNFQCYPQEPLSTDDYDYYVDQQFPLVFR 425
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu08g01350 425 PANTHER TWO-COMPONENT RESPONSE REGULATOR 5 365 IPR045279 GO:0009736
Tsu08g01350 425 SUPERFAMILY Homeodomain-like 174 233 IPR009057 -
Tsu08g01350 425 SUPERFAMILY CheY-like 4 128 IPR011006 -
Tsu08g01350 425 Gene3D - 7 144 - -
Tsu08g01350 425 ProSiteProfiles Response regulatory domain profile. 7 122 IPR001789 GO:0000160
Tsu08g01350 425 Gene3D - 175 232 - -
Tsu08g01350 425 MobiDBLite consensus disorder prediction 312 361 - -
Tsu08g01350 425 MobiDBLite consensus disorder prediction 326 347 - -
Tsu08g01350 425 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 172 232 IPR017930 -
Tsu08g01350 425 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 178 228 IPR006447 GO:0003677
Tsu08g01350 425 PANTHER TWO-COMPONENT RESPONSE REGULATOR ARR14 5 365 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu08g01350 Tsu-Chr8 15553692 15556772 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu08g01350 43 233 Response Regulator Gene Family AT3G16857 24.775 8.04e-14 71.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-ARR-B Tsu08g01350 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu08g01350 - K14491 mtr:MTR_6g045327 115.161