Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu08g01345 ATGGCACTTTCACCACATAAACGGCGTAAACATAACAAAGACGTAACATTCACAACTCATTTCACTCAACTTTCGTTGACAGAACGTGCACATTACCAAACTCTGATTGAGGAAGGAAGAATTTGTTTTACTGAGAAGAACTATAAGGAATTGTTACTGCGCGTGCTTCCTAAACTCCGTAAAATTTGTATACATTTTAAAGTATATAAGTTTGAGAATGATCTTATTCCTGTACAATTTGAACAACAAGATGTTTCAACAAACCTCAAATTGGAATCAATCCTAACTAGGAGGGTACTGCAAGAAAAAGTCCAATGTTCAATTTGTCTATCTACTCCTTCTCATGCACTAATCACAAGATGTACTCATATTTTCTGCCGAAACTGCATCAGAAAATGGTTCGCTTGTGCCAGAAACAAAGGTTTTTGTCCTTATTGTAGAGGTTTACTCACAATAGATGACATGTTCTCCGAAACAAGGCCAGCTACTAAGCTGGAAATTCTGATGAAACTTCTGCGACAAGACACCTCTACCAATTCAAAGTCGGTTGTATTTTCACGTTATGACGATGCACTTTGCTATTTTCATGTGCATTTGCATCATGCTGGTTTCAATTGTCTTCTTTATACtaccaaaaaaatgaaatactttgaaaatagtatcaagaaatttgaaaacagtgATGGACCAGTAGTCTTGTTGGTCGACTTTGAGACTGCTCGCAGAAAACAAATTCTCGTAAATGCTGAATGCAGAGTCTTTCTATTAGATGCGTGTAGAAAATCTATTGAAGAAGAATTGGTCGCTCGTGTTACACAGCCGGTGTGTGTTTCAAGATTGATATCTCAAAACACAATTGAAGATAAAATACTCTCATTGGATGAGACGTTTACTGAAACCGACACTTTTGATTTCTATGACGACCAGGTCCTGAGCTATTTACTAGATGAAGATTCTACGCAATGA 966 0.3551 MALSPHKRRKHNKDVTFTTHFTQLSLTERAHYQTLIEEGRICFTEKNYKELLLRVLPKLRKICIHFKVYKFENDLIPVQFEQQDVSTNLKLESILTRRVLQEKVQCSICLSTPSHALITRCTHIFCRNCIRKWFACARNKGFCPYCRGLLTIDDMFSETRPATKLEILMKLLRQDTSTNSKSVVFSRYDDALCYFHVHLHHAGFNCLLYTTKKMKYFENSIKKFENSDGPVVLLVDFETARRKQILVNAECRVFLLDACRKSIEEELVARVTQPVCVSRLISQNTIEDKILSLDETFTETDTFDFYDDQVLSYLLDEDSTQ 321
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu08g01345 321 PANTHER TRANSCRIPTION TERMINATION FACTOR 2-RELATED 15 295 - -
Tsu08g01345 321 Gene3D - 16 312 IPR027417 -
Tsu08g01345 321 Pfam Zinc finger, C3HC4 type (RING finger) 103 148 - -
Tsu08g01345 321 ProSitePatterns Zinc finger RING-type signature. 121 130 IPR017907 -
Tsu08g01345 321 SMART ring_2 106 146 IPR001841 -
Tsu08g01345 321 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 18 293 IPR027417 -
Tsu08g01345 321 ProSiteProfiles Zinc finger RING-type profile. 106 147 IPR001841 -
Tsu08g01345 321 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 95 155 IPR013083 -
Tsu08g01345 321 SUPERFAMILY RING/U-box 97 153 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu08g01345 Tsu-Chr8 15437996 15439826 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu08g01345 16 295 RAD5 or RAD16-like Gene Family AT5G05130 31.677 1.29e-27 111
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu08g01345 K15711 - mtr:MTR_8g038520 353.984