Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu08g01342 ATGAGTGCACGTTCATTTTTCACCCTTCTATTCTTTACccttttttctttattcatttctcTTTCTCGTGCACTAAACAATGGTTTCACCGTAGAACTCATCCACCGTGATTCTTCAAAATCTCCACTCTACCAACCTACCCAAAACAAATACCAACGTGTTGCCAATGCCATGCGTCGTTCCATCGACCGTGTCAATTATATTTACTACTATTCTATCACTAATACATCTCAAAAAACTGTAACATCTAGTGTAGGTGAGTATCTAATGAGTTATTCAATTGgtactccaccatctaaggtaTACGGCTTTATTGATACCGGTAGTGACCTTCTATGGCTTCAATGTGAGCCTTGTGAACAGTGTTACCCCCAAACCACTCCTATATTTGATCCTTCATTATCATCAAGTTACCGACACATTCCTTGCTTCGATTACACATGTGTGTCTACGACAGATACCTCTTGTGATGTACTAGGTTTTTGTGAATATACTGCTAAGCATTTTGGTCGATCGGTATCACAAGGATATCTTGGTGTGGAAACTCTTACATTAGATTCCACCACCGGAAACTCTGTTTCATTTCCTAATATTGTCGTAGGATGTGGATACAGAAATATGGGGACGTTTCATGGTCAAAGCTCTGGTATAGTTGGTCTTGGAAATGGACAACATTCCCTTACAACACAATTCGGTTCATCAATTGGTAGAAAATTCTCTTATTGTTTGGTTTCATCGTTTTCTAATTCAACAAACAAACTCAATTTTGGTGATGCAGCGGTGGTTTCTGGAAATGGAGCTATGACAACTCCTATAGTGAAAAAGAATGGACAAAGTTTTTACTACTTAACATTGGAAGCATTTAGCGTTGAAGACAAATTAATAGAATTTGGACAACCTACAAATGATGGTAACATCATAATTGATTCTGATACAACATATACGTTTTTGCCGAATGATGTTTATAATAGATTCGAATCAGCTGTTGCAGAATATATTAATATCGAGCGTGTTAACTATCCAAATGGTACATTTAAACTTTGCTATGATATCACATATGAAGGATTTAAAGATCCTCTAATCATTGCACATTTTAAAGGTGCAGATATTAGATTGGATTCTAATAGTATCTTTACTGCAATTGGTGAAGGGATTATTTGCTTGGGTGTTTTTCCATATCAAATGGCGATCCTTGGAAACATGGCTCAACAGAACTTGTTAGTTGGTTATAATCTTGTTCAAAATACTGTTACATTTATGCCTACTGATTGTACCAAGTAG 1281 0.3521 MSARSFFTLLFFTLFSLFISLSRALNNGFTVELIHRDSSKSPLYQPTQNKYQRVANAMRRSIDRVNYIYYYSITNTSQKTVTSSVGEYLMSYSIGTPPSKVYGFIDTGSDLLWLQCEPCEQCYPQTTPIFDPSLSSSYRHIPCFDYTCVSTTDTSCDVLGFCEYTAKHFGRSVSQGYLGVETLTLDSTTGNSVSFPNIVVGCGYRNMGTFHGQSSGIVGLGNGQHSLTTQFGSSIGRKFSYCLVSSFSNSTNKLNFGDAAVVSGNGAMTTPIVKKNGQSFYYLTLEAFSVEDKLIEFGQPTNDGNIIIDSDTTYTFLPNDVYNRFESAVAEYINIERVNYPNGTFKLCYDITYEGFKDPLIIAHFKGADIRLDSNSIFTAIGEGIICLGVFPYQMAILGNMAQQNLLVGYNLVQNTVTFMPTDCTK 426
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu08g01342 426 Pfam Xylanase inhibitor N-terminal 88 258 IPR032861 -
Tsu08g01342 426 CDD pepsin_A_like_plant 87 424 IPR034161 -
Tsu08g01342 426 Gene3D Acid Proteases 257 426 IPR021109 -
Tsu08g01342 426 SUPERFAMILY Acid proteases 82 424 IPR021109 -
Tsu08g01342 426 PANTHER OS07G0603500 PROTEIN-RELATED 9 425 - -
Tsu08g01342 426 PANTHER ASPARTIC PROTEINASE CDR1-RELATED 9 425 - -
Tsu08g01342 426 Pfam Xylanase inhibitor C-terminal 281 420 IPR032799 -
Tsu08g01342 426 Gene3D Acid Proteases 70 256 IPR021109 -
Tsu08g01342 426 ProSiteProfiles Peptidase family A1 domain profile. 88 420 IPR033121 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu08g01342 Tsu-Chr8 15413065 15414345 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu08g01342 85 426 Miscellaneous Gene Families AT1G44130 25.000 6.18e-16 77.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu08g01342 - - gmx:100792722 449.514