Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu08g01339 ATGACTTATTCAGTTGGTACTCCACCGTTCAACATATATGGTATTGTTGATACAGGTAGTGACATTGTTTGGCTTCAATGCGAGCCTTGTGAACAATGCTACAACCAAACCACTCCTATATTTAATCCTTCAAAATCATCAAGTTACAAAAACATTCATTGCGCGTCTGACTTATGTAAATCTGTGAGACGCAGCTCTTGCAATGAACAAGCTTTATGTGAATATACTATTCAATATGGTGACAAATCACATTCAGCAGGAGATATTAGTATTGAGACTCTTACCTTGGATTCCACAACGGGTCATTCTGTTTCATTTCCTAAAACGGTTATAGGATGTGGACACAGTAATACAGGGACGTTTCGCGGAGCAGCCTCTGGTATAGTTGGTCTTGGAATTGGACCAGTGTCTCTTACAACACAGCTGAAGTCTTCAATTGGTGGTAAATTCTCTTATTGTTTGCTGCCATATTCGGATAAGTCAAACNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCAAACAAGACGAATAAACTCAATTTTGGAGAAGCCGCTGTTGTTTCTGGTGATGGTGTTGTGTCAACTCCTTTAGTAAAAAACGACCCTCcaattttttactatttgacATTGGAAGCCTTTagtgttggaaaaaaaagaGTAGAATGGACTTCGGAGGCTGGTATTGAGGGTAACATCATAATTGATTCAGGAACAACATTGACACTTTTACCCTACGAAATTTATACAAATTTGGAATCAGCTGTGGTAGAACAAGTTAAACTAGACCGTGTTGATGATCCTAATCAAATATTCAGCCTTTGCTATAGCATCACATCAGATGATTATGATTTTCCTCTAATCACAGCACATTTTAAAGGCGCGGATGTGCAGTTGCATTCTATTAATACCTTTGTTAAAGTAGCTGATGGCATTGTTTGCTTTGCTTTTCAGGCATCTAAAATTGGTACCATTTTTGGGAACTTAGCTCAGCAGAATTTTTTGGTTGGTTATGATCTTCAACAAAATATTGTGTCGTTTAAGGCTACAGATTGTTCCAAGTTGTAA 1098 0.347 MTYSVGTPPFNIYGIVDTGSDIVWLQCEPCEQCYNQTTPIFNPSKSSSYKNIHCASDLCKSVRRSSCNEQALCEYTIQYGDKSHSAGDISIETLTLDSTTGHSVSFPKTVIGCGHSNTGTFRGAASGIVGLGIGPVSLTTQLKSSIGGKFSYCLLPYSDKSNXXXXXXXXXXXXXXXXXXXXXXNKTNKLNFGEAAVVSGDGVVSTPLVKNDPPIFYYLTLEAFSVGKKRVEWTSEAGIEGNIIIDSGTTLTLLPYEIYTNLESAVVEQVKLDRVDDPNQIFSLCYSITSDDYDFPLITAHFKGADVQLHSINTFVKVADGIVCFAFQASKIGTIFGNLAQQNFLVGYDLQQNIVSFKATDCSKL 365
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu08g01339 365 CDD pepsin_A_like_plant 1 362 IPR034161 -
Tsu08g01339 365 Gene3D Acid Proteases 1 164 IPR021109 -
Tsu08g01339 365 PANTHER OS07G0603500 PROTEIN-RELATED 1 363 - -
Tsu08g01339 365 ProSitePatterns Eukaryotic and viral aspartyl proteases active site. 243 254 IPR001969 GO:0004190|GO:0006508
Tsu08g01339 365 Gene3D Acid Proteases 190 365 IPR021109 -
Tsu08g01339 365 Coils Coil 185 186 - -
Tsu08g01339 365 Pfam Xylanase inhibitor N-terminal 1 161 IPR032861 -
Tsu08g01339 365 PANTHER ASPARTIC PROTEINASE CDR1-RELATED 1 363 - -
Tsu08g01339 365 SUPERFAMILY Acid proteases 2 363 IPR021109 -
Tsu08g01339 365 Pfam Xylanase inhibitor C-terminal 217 358 IPR032799 -
Tsu08g01339 365 ProSiteProfiles Peptidase family A1 domain profile. 1 358 IPR033121 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu08g01339 Tsu-Chr8 15357790 15358887 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu08g01339 4 365 Miscellaneous Gene Families AT1G77480 24.181 1.12e-16 79.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu08g01339 - - mtr:MTR_4g109760 462.611