Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu08g01311 ATGGACAATATTGATACTAGCATGGTGAAAGCATTGCAGAAACTTTGGCATAACAATGTCTCGTTGAAGGTTAACATATTCGGATGGAGGTTGTTGCTCAGAAAATTACCAACTAAGAAGGCTTTATATCGTAGAGGAATTGTTACTAATAATCGAGAAAGATGTTGCGTGTTCTATTTCAAGGAGGATGAAGATCTATACCATACTTTTTTCAATTGTGATGTTACTGCTCAGGTTTGGCAGAGTATTTTCATGTGGATGGGGTGGGCACTATATTCCATTCCTTTTGAAGGTGTGCAACAACACTTCTCTTGGTTTGGAAAATCAGCAACAgaAATGGGTCGTGGGGGTGGAAAAGTAACTATGAAAAAGATTCAAAATGAGAAAGTTCGAAAAGCAGCTTTTGTTCAGAGAAAGAAAGGATTAACAAAAAAAGTATCTAATTTTTCTAGAAACTTTGGAGTTGAAGCTTGTTTAATTGTGAACGACGGTGATGGTGATGGTAAACCAATGACTTGGCCACAAAACTTCTCAACTCTACAATCGATGCTTACAAAATATGAGCAACAAAAGATTGAGAAGActccaaaatattttgatgtgaAGGACTATTTTGCAAATAAGAAGAATATGGTTGAAGCTGATATTTTGAACGTGCGCAAAAAGATCGTGATGAAAAAATACCCAACTTGGGATCGGTGTTTCAATAACATGAAAATGGAGCAACTCAGAGATTTCATGAATAATGTAGATCTCAAGATTCAAGATTGTAATCAAAGAATCAACATGTTGAAAAATGTGCAACAAAGTGATCAAACTAGTTTCATGCAAAATACTACTCAGATGCAAAGTGTGGCTCCAAAGAATGTTGCATCTACACAATCAAGTCAACCCGATGATCTTATGAATCCACTTATAGATATTGGTGAGATGATAGATTTCAGTGATCTTATGGAGTGGGATGAAATAATGGCTCAGAAGAATGTCTCCGCTCCTTTGAAGCCACTTGATAATATTAGTTTGCCTCCGATTTCATCAATAGACCAACTTGGTGAATTTGAGAAGTTGGATAATCTAATGGATAAATCTAATATAGACTGGGCTGATCAGCTTGTGGATTTTGATGATTGGGCTGTTAATAAACTAAATGGTGTTGATGGTTTTTCACCCAAATGCAAGGTTGTTATCAAAGTTGCTCTCATCAATATTTTAAATGCAATCTGGATTGCTCGAAACAATGCAAGGTTCAACAACTTAGTTCCTAACTGGAGAAACTCTGTGGCTTGGATCTCTGCCAATGTTACTGTGGCTGGTAACTTCACAAGCAAGGTATCCTCTTCTTCCATCACAGACTTCACTACTCTAAAAAGATTCAATGTTAACATACATCCTTCTAAACTCACCACTTTTAGAGAAGTTATTTGGCAACCACCTATAGCTCATTGGGTGAAATGCAATATTTATGGGGCTTCaactccttcttcttcttctgcttGTGGAGGTGTTTTTAGAAACAATAGTGTTGGTTTCCTTTGTGGTTTTCCAAATAACATTGGCAAAACTTCTGATTTCATTGCTGAATTGTGCGGTGCCATGACAGCTATAGAAATTGCAGCCTCAAAAAATTGGAGTAATTTGTGGTTGGAAACTGACTCCAATCTTGTGGTTATTATGGCTTTTAAGTCTCCTGTTTTGGTTCCTTGGACCTTAAGCAACAGATGGCATAACTGTATATGTCTTACAAAGTCTATGAACTTTATGGTTTCTCATGTTTTTAGAGAAGGAAATTTTTGTGCTGATAGTTTAGCAAATGTTGGACTCACTCTAGATAGTCTCACTTTTTGGTATGAGATTCCTCCCTTCCTTAAGGGCTATTTTGAAGCTAATAGAATTGGTGAACCCTTCTTTAGGGTTGTAAATATTTAG 1926 0.3572 MDNIDTSMVKALQKLWHNNVSLKVNIFGWRLLLRKLPTKKALYRRGIVTNNRERCCVFYFKEDEDLYHTFFNCDVTAQVWQSIFMWMGWALYSIPFEGVQQHFSWFGKSATEMGRGGGKVTMKKIQNEKVRKAAFVQRKKGLTKKVSNFSRNFGVEACLIVNDGDGDGKPMTWPQNFSTLQSMLTKYEQQKIEKTPKYFDVKDYFANKKNMVEADILNVRKKIVMKKYPTWDRCFNNMKMEQLRDFMNNVDLKIQDCNQRINMLKNVQQSDQTSFMQNTTQMQSVAPKNVASTQSSQPDDLMNPLIDIGEMIDFSDLMEWDEIMAQKNVSAPLKPLDNISLPPISSIDQLGEFEKLDNLMDKSNIDWADQLVDFDDWAVNKLNGVDGFSPKCKVVIKVALINILNAIWIARNNARFNNLVPNWRNSVAWISANVTVAGNFTSKVSSSSITDFTTLKRFNVNIHPSKLTTFREVIWQPPIAHWVKCNIYGASTPSSSSACGGVFRNNSVGFLCGFPNNIGKTSDFIAELCGAMTAIEIAASKNWSNLWLETDSNLVVIMAFKSPVLVPWTLSNRWHNCICLTKSMNFMVSHVFREGNFCADSLANVGLTLDSLTFWYEIPPFLKGYFEANRIGEPFFRVVNI 641
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu08g01311 641 SMART madsneu2 113 174 IPR002100 GO:0003677|GO:0046983
Tsu08g01311 641 PANTHER PROTEIN, PUTATIVE-RELATED 117 370 - -
Tsu08g01311 641 PANTHER MADS BOX PROTEIN 117 370 - -
Tsu08g01311 641 SUPERFAMILY Ribonuclease H-like 484 616 IPR012337 -
Tsu08g01311 641 SUPERFAMILY SRF-like 117 193 IPR036879 GO:0003677|GO:0046983
Tsu08g01311 641 Pfam Reverse transcriptase-like 494 604 IPR002156 GO:0003676|GO:0004523
Tsu08g01311 641 Gene3D - 127 210 IPR036879 GO:0003677|GO:0046983
Tsu08g01311 641 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 124 173 IPR002100 GO:0003677|GO:0046983
Tsu08g01311 641 Coils Coil 638 641 - -
Tsu08g01311 641 CDD RNase_H_like 485 604 IPR044730 -
Tsu08g01311 641 Gene3D - 482 608 IPR036397 GO:0003676
Tsu08g01311 641 ProSiteProfiles MADS-box domain profile. 115 175 IPR002100 GO:0003677|GO:0046983
Tsu08g01311 641 Pfam zinc-binding in reverse transcriptase 9 80 IPR026960 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu08g01311 Tsu-Chr8 14895671 14904300 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu08g01311 113 260 Type I MADS-box Gene Family AT5G55690 32.026 2.15e-14 72.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Tsu08g01311 RVT_3 1.7e-10 CL0219
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu08g01311 - - mtr:MTR_2g049610 233.417