Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu08g01302 atgaaCGATGATGGAAGACAAATGGGGTTGCATTATATGGATTCTGGTGTCTTTCCTCCTTATGCTGTTAATGAAATGGATTTCTTTCAAGGCATTAATCATGTTCCTGTCAATTATGCTTTTCCTGGCTCAATGCCTCATCagGATAGTGTCTACTGGTCGATGAACATGAGTCCTTATAGGTTTGGAATGTATGGACCTGGAAGCACATCTTATTACAGTTCTTATGAGGTAAACGATCACTTGCCAAGAATGGAGAACAATAGGACCGAGTGGGAATACCCTTCTGAAGTGATCTCTGAGGAACCGGCTTCAACAGATGGAGTTAGCATGCAGACTATCCCTGAAGAACGTAGTCCCAATCATCAAGAGTCCAGTAGTAGCCAGGTGATATGGCAAGACAACATTGATCCAGACAATATGACTTATGAGGAACTACTGGACCTGGGGGAAGCAGTTGGAACTCAAAGCCGAGGTCTTCCACAAGAACTTATTGATACGCTTCCAACCTCAAAGTACAAATTTAGCAGcttattcaaaagaaaaaattctgCGAAAAGGTGTGTAATTTGCCAGATGACATATAGAAGAGGAGACCAGCAAATGAAATTGCCATGCAGTCATGTTTATCATGGTGAATGCATCACCAAATGGCTTAGCATTAACAAGaaatGTCCTGTTTGCAACACTGAGGTTTTTGGCGAGGAATCTATGCAGTAG 720 0.4069 MNDDGRQMGLHYMDSGVFPPYAVNEMDFFQGINHVPVNYAFPGSMPHQDSVYWSMNMSPYRFGMYGPGSTSYYSSYEVNDHLPRMENNRTEWEYPSEVISEEPASTDGVSMQTIPEERSPNHQESSSSQVIWQDNIDPDNMTYEELLDLGEAVGTQSRGLPQELIDTLPTSKYKFSSLFKRKNSAKRCVICQMTYRRGDQQMKLPCSHVYHGECITKWLSINKKCPVCNTEVFGEESMQ 239
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu08g01302 239 PANTHER E3 UBIQUITIN-PROTEIN LIGASE BIG BROTHER 1 238 - -
Tsu08g01302 239 SMART ring_2 188 228 IPR001841 -
Tsu08g01302 239 MobiDBLite consensus disorder prediction 103 130 - -
Tsu08g01302 239 Pfam Ring finger domain 187 229 IPR001841 -
Tsu08g01302 239 MobiDBLite consensus disorder prediction 99 130 - -
Tsu08g01302 239 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 1 238 IPR033276 GO:0004842|GO:0016567|GO:0046621
Tsu08g01302 239 SUPERFAMILY RING/U-box 187 233 - -
Tsu08g01302 239 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 150 233 IPR013083 -
Tsu08g01302 239 ProSiteProfiles Zinc finger RING-type profile. 188 229 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu08g01302 Tsu-Chr8 14783590 14788100 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu08g01302 1 239 C3H Transcription Factor Family AT3G63530 52.400 5.40e-89 261
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu08g01302 K19045 - gmx:100792734 394.045