Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu08g01298 ATGACTGATCCTCAATCTAACTTTTTTGATGAATGGTTCAACTTCATGCTCCTTCAACCTAATCAgtactcttcttcttctactcAACAAACCAAAAACATGTTTGATATTCAATCTCATCATGATCTACCCTCATCATCCTCCTCAACCATAAATCCTCCTTCTCCTCCTCTTAGAGAAGCACTTCCtctaattaacaaattaagtctcataaatcatcatcaacaacatcaacaacaacaaaatgaaCCCTCAAACACCATAATAGAACATGAAGAATACAAAAGAATGGAAAGGCATGGTGATGAAAGTGTTACTTTTTCCTTACAAATAGGGCTTCCTAGAATGAGTGGTAATTCTTCTTCTGATCTTGGAGCAAGGATGGTCTCAAATTGTATAGAAATGGctgaaaaagaagaaactaaTATAATTTGTGAAAACCCTTTGGATAAATTGAACAAAGGTCAGTATTGGATTCCAACACCTTCACAAATTCTCATTGGTCCTACACAATTCTCATGTCCTGTGTGCTCTAAAACATTCAATAGATACAACAATCTTCAGATGCATATGTGGGGACATGGATCTCAATACAGAAAAGGACCAGATTCTCTAAAAGGAACACAACCAACAGCAATGTTAAGGCTTCCATGTTTTTGTTGTGCACCAGGTTGTAAGCACAACATTGATCATCCTAGAGCAAAGCCTCTTAAAGATTTTAGAACTCTTCAAACACATTATAAGAGAAAGCATGGTATTAAACCTTATTTGTGTAGAAAATGTGGCAAATCATTTGCAGTGAAAGGTGATTGGAGAACACATGAGAAGAATTGTGGCAAAATATGGTATTGTTTATGTGGTTCAGATTTTAAACATAAAAGGTCTCTTAAAGATCATATTAAAGCTTTTGGTTATGGTCATGGTGCTTTTGGTATTGATTGCTtgcaagaagaagatgaagctgGTTCAGAAATTGAACATGATGGTGGAAGTTCAATGTGA 1002 0.3174 MTDPQSNFFDEWFNFMLLQPNQYSSSSTQQTKNMFDIQSHHDLPSSSSSTINPPSPPLREALPLINKLSLINHHQQHQQQQNEPSNTIIEHEEYKRMERHGDESVTFSLQIGLPRMSGNSSSDLGARMVSNCIEMAEKEETNIICENPLDKLNKGQYWIPTPSQILIGPTQFSCPVCSKTFNRYNNLQMHMWGHGSQYRKGPDSLKGTQPTAMLRLPCFCCAPGCKHNIDHPRAKPLKDFRTLQTHYKRKHGIKPYLCRKCGKSFAVKGDWRTHEKNCGKIWYCLCGSDFKHKRSLKDHIKAFGYGHGAFGIDCLQEEDEAGSEIEHDGGSSM 333
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu08g01298 333 Gene3D Classic Zinc Finger 234 306 - -
Tsu08g01298 333 ProSiteProfiles Zinc finger C2H2 type domain profile. 172 199 IPR013087 -
Tsu08g01298 333 PANTHER ZINC FINGER PROTEIN WIP2 1 328 IPR043584 GO:0003700|GO:0010468
Tsu08g01298 333 ProSiteProfiles Zinc finger C2H2 type domain profile. 256 276 IPR013087 -
Tsu08g01298 333 ProSitePatterns Zinc finger C2H2 type domain signature. 174 194 IPR013087 -
Tsu08g01298 333 Gene3D Classic Zinc Finger 171 194 - -
Tsu08g01298 333 PANTHER ZINC FINGER PROTEIN WIP2-LIKE 1 328 - -
Tsu08g01298 333 SMART c2h2final6 172 194 IPR013087 -
Tsu08g01298 333 SMART c2h2final6 256 276 IPR013087 -
Tsu08g01298 333 SUPERFAMILY beta-beta-alpha zinc fingers 238 276 IPR036236 -
Tsu08g01298 333 SUPERFAMILY beta-beta-alpha zinc fingers 165 194 IPR036236 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu08g01298 Tsu-Chr8 14699373 14703930 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu08g01298 1 326 C2H2 Transcription Factor Family AT3G57670 54.570 4.04e-125 362
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Tsu08g01298 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu08g01298 - - gmx:100794446 510.76
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu08g01298 08 14699373 14703930 Tsu08g01298 08 14699373 14703930 ECH