Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu08g01293 aTGGCTCACAAATTAACcaccaaaaaagaagaaacagaATTTGAAGTACCTGAAACAACAATCACACCatgcatcaacaacaacaacccttcaacaacaataacaacagaaTCTTCTTCTAGATTTTTTgaagacaacaacaacaacaacaacgtcgCTAAACCATCAGCAACAGCCAGATCCGCCACGTCATCACGTTCACCGAAGAGATCTCATCCTAGCAACGAAGAAACAGAAATTCAACCACAAACGACGTCGTCAGAAGCTAAACGTGCTGTTAATCGTTGCTCCGGTTGTCGAAAAAGAGTCGGTCTTACAGGATTCCGTTGCCGATGCGGTGATCTGTTTTGCTCCGATCATCGTTACTCCGATCGTCATGATTGTTCTTATGATTATAAAGCTGCTGGTAGAGAAACTATTGCTAGAGAAAATCCTGTTGTTAGAGCGGCTAAGATCGTTAAGCTCTGA 468 0.3462 MAHKLTTKKEETEFEVPETTITPCINNNNPSTTITTESSSRFFEDNNNNNNVAKPSATARSATSSRSPKRSHPSNEETEIQPQTTSSEAKRAVNRCSGCRKRVGLTGFRCRCGDLFCSDHRYSDRHDCSYDYKAAGRETIARENPVVRAAKIVKL 155
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu08g01293 155 MobiDBLite consensus disorder prediction 19 69 - -
Tsu08g01293 155 Gene3D - 45 151 IPR035896 -
Tsu08g01293 155 SMART AN1_Zf_4 96 133 IPR000058 GO:0008270
Tsu08g01293 155 ProSiteProfiles Zinc finger AN1-type profile. 90 136 IPR000058 GO:0008270
Tsu08g01293 155 PANTHER AN1-LIKE ZINC FINGER PROTEIN 1 154 - -
Tsu08g01293 155 MobiDBLite consensus disorder prediction 77 91 - -
Tsu08g01293 155 MobiDBLite consensus disorder prediction 1 16 - -
Tsu08g01293 155 MobiDBLite consensus disorder prediction 1 91 - -
Tsu08g01293 155 PANTHER AN1-TYPE ZINC FINGER PROTEIN 1 154 - -
Tsu08g01293 155 Pfam AN1-like Zinc finger 96 133 IPR000058 GO:0008270
Tsu08g01293 155 SUPERFAMILY AN1-like Zinc finger 79 149 IPR035896 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu08g01293 Tsu-Chr8 14607089 14608059 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu08g01293 67 155 C2H2 Transcription Factor Family AT3G52800 52.809 2.03e-28 101
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu08g01293 - - lja:Lj3g3v0478150.1 167.933
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu03g00519 03 4395078 4396177 Tsu08g01293 08 14607089 14608059 ECH
Tsu08g01293 08 14607089 14608059 Tsu08g01293 08 14607089 14608059 ECH