Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu08g01289 ATGGACAAGGGACCACCTCCTACCCTCTTTGTTAATGATGGTTCGTTTATGGAGAGATTCAGGCAGCTCCAACAAGAGCAGGAAAGTGGGAAAAATGCCAAAACAGAAGACTCTAAACCAATTAAAGTTGTTTCAGGACCTCTAACTCCTAAACCCTCCAATAGTAAGAGTAATGATGCAAAGAAATCTTCCCAGGGTGGTTCTAGTGGCAAACTTGCTTTCAGTTTGAAACAAAAGTCAAAGCTAGTACCGCCCCCTGTTAAGCTGGCTGATGACGATGAAGATGAAATAGATGCTGGGTATGTTTCAAATGATGCACCATTAAAACGGCAAAAATTGGGTCAGGATGATGGCATTGAGCAATCATCAAGACAACTTGATGTTGCACCTCCTCCCCCAAGTGATCCTACAGTGAAGAAAGTTGCTGACAAACTCGCAAGTTTTGTGGCTAAAAACGGAAGAACATTTGAAGATGTTACACGGCAAAAAAACCCTGGGGATACGCCTTTCAAGTTTCTATTTGATGTTAAATGTTCTGACTATAAATATTATGAACATCGGCTTGCTCAAGAGGAGAAGGCCCTTTCACAGTACAAAGAACCACAGGCAAATCATAATGTTGGGACAAGCATTTCATCTTCCAGACCAACAAATGGTCCTTCGAGATCATCCCAGCAGCATTCAACTTACCAAATCCCCGCTTCTGCTTTATATGATAGTGAAGTATCAAGGGGTTCTGGATCTTCAGTTCAAGCATTTTCAGCTGGAAGCTCGGATGAGCCCGGTGGATCATCAAATGCTAGTTCTTTAGCACTAATGGAGTTTTACATGAAGAAAGCTGCACAGGAAGAAAAGTTTAAACAACCTAAGTATTCAAAAGACGAGATGCCCCCTCCTCCTTCTCTTCAACAAGGATCAATTATTGATGCTTCAGCTTCAGGGAAAAAAGGCCATCACATGGGTGATTATATTCCTCAGGAGGAACTTGAAAAGTTCTTGGCTAGCTGTAATGATGCAGCAGCAATGAAAGCTGCAAAGGAGGCTGCGGAGAAGGCCAAAATTCAGGCTGATAATGTGGGTCACAGGCTTTTATCAAAAATGGGTTGGAAAGAAGGTGAGGGTCTAGGTGGCTCTAGGAAGGGTATTTCAGATCCCATCATGGCTGGCAGTGTTAAGAAAGATAACTTGGGGGTAGGTGCTGTCCAACCTGGGGAAGTGACTCCTGAGGATGACATCTATGAGCAATACAAAAAGCGAATGATGCTTGGCTACCGTCACAGACCCAATCCTCTGAACAATCCTCGCAAGGCTTATTACTGA 1320 0.4333 MDKGPPPTLFVNDGSFMERFRQLQQEQESGKNAKTEDSKPIKVVSGPLTPKPSNSKSNDAKKSSQGGSSGKLAFSLKQKSKLVPPPVKLADDDEDEIDAGYVSNDAPLKRQKLGQDDGIEQSSRQLDVAPPPPSDPTVKKVADKLASFVAKNGRTFEDVTRQKNPGDTPFKFLFDVKCSDYKYYEHRLAQEEKALSQYKEPQANHNVGTSISSSRPTNGPSRSSQQHSTYQIPASALYDSEVSRGSGSSVQAFSAGSSDEPGGSSNASSLALMEFYMKKAAQEEKFKQPKYSKDEMPPPPSLQQGSIIDASASGKKGHHMGDYIPQEELEKFLASCNDAAAMKAAKEAAEKAKIQADNVGHRLLSKMGWKEGEGLGGSRKGISDPIMAGSVKKDNLGVGAVQPGEVTPEDDIYEQYKKRMMLGYRHRPNPLNNPRKAYY 439
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu08g01289 439 MobiDBLite consensus disorder prediction 195 266 - -
Tsu08g01289 439 Pfam Surp module 140 190 IPR000061 GO:0003723|GO:0006396
Tsu08g01289 439 Gene3D Surp module 114 196 IPR035967 GO:0003723|GO:0006396
Tsu08g01289 439 MobiDBLite consensus disorder prediction 21 139 - -
Tsu08g01289 439 SUPERFAMILY Surp module (SWAP domain) 123 193 IPR035967 GO:0003723|GO:0006396
Tsu08g01289 439 SMART surpneu2 139 193 IPR000061 GO:0003723|GO:0006396
Tsu08g01289 439 MobiDBLite consensus disorder prediction 286 307 - -
Tsu08g01289 439 ProSiteProfiles SURP motif repeat profile. 141 184 IPR000061 GO:0003723|GO:0006396
Tsu08g01289 439 Pfam G-patch domain 357 400 IPR000467 GO:0003676
Tsu08g01289 439 MobiDBLite consensus disorder prediction 197 266 - -
Tsu08g01289 439 PANTHER ARGININE/SERINE RICH SPLICING FACTOR SF4/14 3 439 IPR040169 -
Tsu08g01289 439 MobiDBLite consensus disorder prediction 48 75 - -
Tsu08g01289 439 SMART G-patch_5 354 401 IPR000467 GO:0003676
Tsu08g01289 439 PANTHER SURP AND G PATCH DOMAIN-CONTAINING 1 3 439 - -
Tsu08g01289 439 ProSiteProfiles G-patch domain profile. 356 403 IPR000467 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu08g01289 Tsu-Chr8 14565562 14572245 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu08g01289 342 439 C2H2 Transcription Factor Family AT5G26610 32.743 8.66e-09 54.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu08g01289 K13096 - gmx:100786213 662.144
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu08g01289 08 14565562 14572245 Tsu08g01289 08 14565562 14572245 ECH