Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu08g01286 AGAACAAGTCTTAATTCCCATAAACAAACCATGCATTTATCTTGAAGGAGCTGGTAGAGATTCAACAAGAATTGAATGGAATGCACGTCAGAATGCTACTTTCAAATTAAAAGCAAACAATACACTTGTAAAGGGCATTACTTTCATGAATACATTGAACAACCCAGTAATTGTAACATCCATGGTCGAAAAAGTCACACAAGCCCAAGCTGCTCAAATACATGCAGATAAATGTGCTTTCTTTAACTGTGCTTTTCTTGGGGTGCAAGATACCCTATATGATGATTATGGTCGCCATTACTACCACAATTGTTACATCGAAGTTGTAAATATGCAGGCaagtacaatatttttttcaacGGGAAAAAATGGTCCAAAAAAGGATGGGGTTATTACAGCCCAAGAAAGAAACTCACCAAACGATCCAAGTGGATTTGTGTTTAAAAATTGTAACATAAGTGGGACAGGTGGAAAGGTTGAACTTGGGAGGGCATTGGATGCTTATGCAAGAGTCATCATAGTTGATTCATACCTATCAGATGTGGTTAGACCTGAGGGTTGGAGTCCTAGAGCTTTTGTTGGCCATGAAGCAACCCTTACTTTTGTGGAGGAGGGAAATAGAGGACCAGGAGCAGACAAATCAAAGCGTGTGAATTGGATGAAGCACTTGAGTGGATCTGAACTTGATAAATTCTTGAATATGTCTTATATTGATGAAGAAGGGTGGATTTCTGAATTGCCAAAAACCGTATTCATTTGA 760 0.3789 EQVLIPINKPCIYLEGAGRDSTRIEWNARQNATFKLKANNTLVKGITFMNTLNNPVIVTSMVEKVTQAQAAQIHADKCAFFNCAFLGVQDTLYDDYGRHYYHNCYIEVVNMQASTIFFSTGKNGPKKDGVITAQERNSPNDPSGFVFKNCNISGTGGKVELGRALDAYARVIIVDSYLSDVVRPEGWSPRAFVGHEATLTFVEEGNRGPGADKSKRVNWMKHLSGSELDKFLNMSYIDEEGWISELPKTVFI 252
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu08g01286 252 Pfam Pectinesterase 1 238 IPR000070 GO:0030599|GO:0042545
Tsu08g01286 252 PANTHER ACYL-COA THIOESTER HYDROLASE YBHC-RELATED 1 249 - -
Tsu08g01286 252 SUPERFAMILY Pectin lyase-like 1 244 IPR011050 -
Tsu08g01286 252 Gene3D - 1 249 IPR012334 -
Tsu08g01286 252 PANTHER PECTINESTERASE 1 249 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu08g01286 Tsu-Chr8 14458858 14475480 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu08g01286 1 243 Carbohydrate Esterase AT1G05310 36.466 2.66e-45 154
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu08g01286 - - cam:101494460 374.015