Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu08g01283 ATGGCTCAGTGGCAAGGTGATTTTGAACTTGAGGGTATTGACTACATGTTCAAGATTGTCATGATTGGTGACTCTGGTGTTGGAAAATCTCAGCTTTTGAATAGGTATGTTAGAAATGAGTTCTACATGAATTCTAAAGCAACAATTGGTGTTGAGTTTCTGACCAAGACTGTTCAAATGGATCACAAACTAGTCAAGGCTCAGATTTGGGATACTGCTGGTCAAGAAAGGTACTCCGCAATTACATCTGCATATTACAGAGGTGCAACTGGAGCATTGCTAACATATGACATAACCAAGCGCCGTACCTCTGACAATATCGTAAAGTGGCTGGAAGAACTACATCGTCATGCAGACAAAAACATAGTTGTCATGCTTGTTGGCAACAAGACTGACCTGAGTTCGAACCGAGAAGTTCCTATCGAGGAAGCCAAAGAGTTTGCGAAAGAGAAAGGTCTCTTCTTCCTGGAGACATCTGCGCTTGACTCGAACAATGTAGAGCCAGCTTTCCTTAGTCTTCTTTCACAGATATATATGACTGTCAGTAAGAAACACATGACTGCAGATGGACATGGACCAAATTGGGAGAAAGTAAATCTTGGTTTTGACGGAACAAAATTATTGGTCTCGCCGCAAGTACCGGAATGTCAAAAATCTAAAAGGAAATTCAATTGTTGCAGTGTTCTTTAG 690 0.4116 MAQWQGDFELEGIDYMFKIVMIGDSGVGKSQLLNRYVRNEFYMNSKATIGVEFLTKTVQMDHKLVKAQIWDTAGQERYSAITSAYYRGATGALLTYDITKRRTSDNIVKWLEELHRHADKNIVVMLVGNKTDLSSNREVPIEEAKEFAKEKGLFFLETSALDSNNVEPAFLSLLSQIYMTVSKKHMTADGHGPNWEKVNLGFDGTKLLVSPQVPECQKSKRKFNCCSVL 229
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu08g01283 229 SMART rho_sub_3 19 176 IPR001806 GO:0003924|GO:0005525
Tsu08g01283 229 PANTHER - 1 227 - -
Tsu08g01283 229 SMART rab_sub_5 17 180 - -
Tsu08g01283 229 PRINTS Transforming protein P21 ras signature 17 38 - -
Tsu08g01283 229 PRINTS Transforming protein P21 ras signature 40 56 - -
Tsu08g01283 229 PRINTS Transforming protein P21 ras signature 58 80 - -
Tsu08g01283 229 PRINTS Transforming protein P21 ras signature 120 133 - -
Tsu08g01283 229 PRINTS Transforming protein P21 ras signature 155 177 - -
Tsu08g01283 229 ProSiteProfiles small GTPase Rho family profile. 10 188 - -
Tsu08g01283 229 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 14 182 IPR027417 -
Tsu08g01283 229 Pfam Ras family 18 178 IPR001806 GO:0003924|GO:0005525
Tsu08g01283 229 Gene3D - 11 199 IPR027417 -
Tsu08g01283 229 CDD Rab11_like 14 178 - -
Tsu08g01283 229 ProSiteProfiles small GTPase Ras family profile. 11 229 IPR001806 GO:0003924|GO:0005525
Tsu08g01283 229 SMART ran_sub_2 22 223 - -
Tsu08g01283 229 PANTHER RAB GTPASE-LIKE PROTEIN G3A 1 227 - -
Tsu08g01283 229 TIGRFAM small_GTP: small GTP-binding protein domain 15 170 IPR005225 GO:0005525
Tsu08g01283 229 SMART ras_sub_4 17 180 - -
Tsu08g01283 229 ProSiteProfiles small GTPase Rab1 family profile. 12 216 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu08g01283 Tsu-Chr8 14438019 14439672 Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu08g01283 K07904 - gmx:100789008 348.206