Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu08g01277 ATGAAGTCCCTACAATCATTtgctttctttttaatatttgtagtCCTTGCTTTTGATATTTGTGAATCAAAAGATTGTAGCAATCCCTTCAAGACCATTGTTGTTAGTCAATCAGACACATCAAATTTCACAACAATTCAAAGTGCCATAGATTCTGTTCCTACAGGAAACTCTCAATGGATTCACATCCAAATTTCTCCTGGTGTTTATAGAGAGCAAGTCTTCATTCCAAAAGACAAGCCATGCATTTATGTTGAAGGAGCTGGTAGAAATTCAACAAGTATTGAATGGAGTTCACATTTGAATGCCACATTTGTAACAAAAGCAAATAACACAGTTGCAAACGGCATTACTTTCACGAATACATTGAACAGTCCAGTAATGTTGGAGGTGAATAATATCACACAAGCCAAAGCTGCTTGGATCCATGCAGATAAATGTGTTTTCTTTAATTGTGCTTTTCTTGGAGTGCAAGATACCCTAAAAGATGATTATGGTCGACATTACTACAATAATTGTTACATTCAAGGTGGAACGGATTTCATATATGGGGATGGTCAATCTATCTTTGagGCAAGTACAATATTCTTTTCAATGGGAAAATATGGTCCAAAAAAGAATGGAGTTATTACAGCACATGAAAGGGATTCACCAAATGATACAAGTGGGTTTGTGTTTAAAAATTGCAACATTTCTGGGACAGGAGGAAAGACTCAACTTGGAAGGGCAATGGGTCCTTATGCAAGAGTCATCATATCTGATTCATACCTATCTGATGTGGTTAGACCTGAGGGTTGGGGTCCTAGAGAATTTGTTGGCCATGAAGGAAACCTTACTTTTGTGGAGGAGGGAAATAGAGGACCAGGAGCAGACAAATCAAAGCGTGTGAATTGGATGAAGCACTTGAGTGGATCTGAACTTGATAAATTCTTGAATATATCTTATATTGATGAAGAAGGGTGGATTTCTGAATTGCCAAAAACCATATTCATATGA 996 0.3635 MKSLQSFAFFLIFVVLAFDICESKDCSNPFKTIVVSQSDTSNFTTIQSAIDSVPTGNSQWIHIQISPGVYREQVFIPKDKPCIYVEGAGRNSTSIEWSSHLNATFVTKANNTVANGITFTNTLNSPVMLEVNNITQAKAAWIHADKCVFFNCAFLGVQDTLKDDYGRHYYNNCYIQGGTDFIYGDGQSIFEASTIFFSMGKYGPKKNGVITAHERDSPNDTSGFVFKNCNISGTGGKTQLGRAMGPYARVIISDSYLSDVVRPEGWGPREFVGHEGNLTFVEEGNRGPGADKSKRVNWMKHLSGSELDKFLNISYIDEEGWISELPKTIFI 331
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu08g01277 331 PANTHER ACYL-COA THIOESTER HYDROLASE YBHC-RELATED 1 328 - -
Tsu08g01277 331 Gene3D - 27 328 IPR012334 -
Tsu08g01277 331 Pfam Pectinesterase 33 316 IPR000070 GO:0030599|GO:0042545
Tsu08g01277 331 PANTHER PECTINESTERASE 1 328 - -
Tsu08g01277 331 SUPERFAMILY Pectin lyase-like 31 323 IPR011050 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu08g01277 Tsu-Chr8 14345916 14348275 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu08g01277 7 275 Carbohydrate Esterase AT2G19150 43.636 6.16e-65 205
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu08g01277 - - cam:101494460 501.13