Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu08g01274 atgtgcatgGAAGGAAGAGAAGGTATGAATCCGGGGGTAACAGTGATAGGGGCAGAAGCTCCATCAGCTTATCATGTAGCACCAAGAAGTGAAGCTCCAAGCCAGGTTCATAAccctgaagcagcagcagctGGGGCCGGTACTGCCCCAGCTGCTGCTCCTGTTGGGGTTTCACCCGTAAGTGTAGGTTTGGATGGAACTGTTAAGAAGAAAAGGGGTCGACCTAGGAAATATGGGCCAGATGGGTCCGTCCATATGGCATTGTCACCAGCACCTATCTCATCTTCGGCTCCGCCCACTCTTCATGACTTCTCATCAGTGAAGCGAGTGAAACCTCATGGGATGGAGTTTAAGAGGGCAAAGAAAGTTGTGATGGATCATCTCGGTGAGATGAACGGACACTCCGATGGCACAAACTTTATGCCACATTTCATCACTGTCAATGCCGGAGAGGATATTACAAACAAAGTTATATCTTTTTCTCAACAAGGGCCGCGAGCAATATGTATCTTGTCTGCTACTGGAGCGATTTCAAATGTTACACTCCGTCATCCAGATTCTTCGGGGGGTACTTTGACCTACGAGGGTCGTTTTGAGATCCTTTCTTTATCCGGATCATTCATGCCTACTGAGAATCAAGGAACAAGAAGCAGGGCAGGTGGAATGAGTGTCTCGCTGGCAAGAACTGATGGTCGCGTTGTAGGCGGTGGAGTTGCTGGTGTTCTTATAGCTGCCAGTCCTGTGCAGGTTGTGGTCGGAAGTTTTCTACCAAACGGCAATCAAGATCAGAAACTGAAGAAGCCGAAGTCTGATTATGCAGCAGCCACATTTACTCAAGCCATTGTCGTATCCTCAGCACCGCCACCACCCCAAACTAATAATGCTGAAAAAGACGACGTCATGAGTGGAGGTGGACATGTAATGCAAAATTCTGGAAATGTGAACTCAAATTTTACTTCTCCGCCTAGCGCATTTCGAAGAGACAACAACTGGGCGGCCAACATGCAGTCTCTTCCGGACACAAGAAAGCCGGCTACTGATATAAACATATCTTTACCTGATAGTTAA 1068 0.4635 MCMEGREGMNPGVTVIGAEAPSAYHVAPRSEAPSQVHNPEAAAAGAGTAPAAAPVGVSPVSVGLDGTVKKKRGRPRKYGPDGSVHMALSPAPISSSAPPTLHDFSSVKRVKPHGMEFKRAKKVVMDHLGEMNGHSDGTNFMPHFITVNAGEDITNKVISFSQQGPRAICILSATGAISNVTLRHPDSSGGTLTYEGRFEILSLSGSFMPTENQGTRSRAGGMSVSLARTDGRVVGGGVAGVLIAASPVQVVVGSFLPNGNQDQKLKKPKSDYAAATFTQAIVVSSAPPPPQTNNAEKDDVMSGGGHVMQNSGNVNSNFTSPPSAFRRDNNWAANMQSLPDTRKPATDINISLPDS 355
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu08g01274 355 MobiDBLite consensus disorder prediction 42 84 - -
Tsu08g01274 355 MobiDBLite consensus disorder prediction 284 298 - -
Tsu08g01274 355 SUPERFAMILY AF0104/ALDC/Ptd012-like 140 258 - -
Tsu08g01274 355 Gene3D - 142 272 - -
Tsu08g01274 355 MobiDBLite consensus disorder prediction 284 355 - -
Tsu08g01274 355 ProSiteProfiles PPC domain profile profile. 137 278 IPR005175 -
Tsu08g01274 355 Pfam Plants and Prokaryotes Conserved (PCC) domain 142 255 IPR005175 -
Tsu08g01274 355 MobiDBLite consensus disorder prediction 306 344 - -
Tsu08g01274 355 CDD DUF296 142 255 IPR005175 -
Tsu08g01274 355 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 9 3 354 IPR039605 GO:0003680
Tsu08g01274 355 PANTHER AT HOOK MOTIF DNA-BINDING FAMILY PROTEIN 3 354 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu08g01274 Tsu-Chr8 14309940 14314505 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu08g01274 8 286 AT-hook Motif Nuclear Localized (AHL) Family AT4G12080 55.663 8.37e-92 277
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu08g01274 - - gmx:100793726 472.626
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu04g01646 04 17455039 17458603 Tsu08g01274 08 14309940 14314505 PCT