Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu08g01271 ATGAATTATTGTGGAGGAAAGATTGGTGGTGGTGGAAGTGATCAAAGAGGAAATGGTGGTGGTGGACCTTGTGGTGCTTGCAAGTTTTTAAGAAGAAAGTGTATAAAAGGTTGCATATTTGCACCATATTTTGATTCTGACCAAGGAACGGTTCATTTTGCAGCGGTTCATAAAGTGTTTGGTGCTAGTAATGCCTCTAAGTTACTCATGCGTATTCCAGCTCATAAACGTCTTGATGCTGTTGTTACTCTTTGTTATGAAGCTCTTGCTAGGGCTAGAGATCCTGTTTATGGTTGTGTTGCTCACATCTTTGCACTTCAACAACAgGTCATGAACTTGCAGGCTGAGTTAACCTACGTTCAAGCGACTCTTGCGACAATGCAGCGCTTCCCGATCTCACTAGCTCCATCTCTTCCAAACCCTCAAAGCTCATCATCACAAAGTCTTCATTCTTCCTCAGATCAATTGGGAACAAATGCAGACTTGCAAAGTGCCTCTAACATGTCTATGCACTTTGATCCTCATCAACAACTTTCAACATCATTGGATTTGAGCAGTTTCTTCAATCAATCAGATCAACAACTTGAAGATGATGAACTCCAAGCTTTGGCTAGAGAATTTGTCTCTAGATACTTGCCTGGTGTAAGATTCCAGCCATCTAATTCTCACTAA 672 0.4122 MNYCGGKIGGGGSDQRGNGGGGPCGACKFLRRKCIKGCIFAPYFDSDQGTVHFAAVHKVFGASNASKLLMRIPAHKRLDAVVTLCYEALARARDPVYGCVAHIFALQQQVMNLQAELTYVQATLATMQRFPISLAPSLPNPQSSSSQSLHSSSDQLGTNADLQSASNMSMHFDPHQQLSTSLDLSSFFNQSDQQLEDDELQALAREFVSRYLPGVRFQPSNSH 223
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu08g01271 223 PANTHER LOB DOMAIN-CONTAINING PROTEIN 19 17 214 - -
Tsu08g01271 223 ProSiteProfiles LOB domain profile. 22 124 IPR004883 -
Tsu08g01271 223 PANTHER LOB DOMAIN CONTAINING PROTEIN 17 214 - -
Tsu08g01271 223 MobiDBLite consensus disorder prediction 136 160 - -
Tsu08g01271 223 Pfam Lateral organ boundaries (LOB) domain 23 121 IPR004883 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu08g01271 Tsu-Chr8 14242097 14247855 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu08g01271 18 221 AS2 family AT4G00210 55.000 2.03e-75 225
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Tsu08g01271 LOB 2.5e-36 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu08g01271 - - gmx:100791377 294.278
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu04g01648 04 17482555 17485796 Tsu08g01271 08 14242097 14247855 PCT