Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu08g01269 atgagTATAAACTCTGGTTGTAGTGGTAGCGGTTGCGATGGTAGTGGTGGAAGCGGAGGTACTTGTGGCCCATGTGGTGCGTGCAAGTTTTTGAGGAGGAAGTGTATACCGGGTTGTATCTTTGCGCCGTACTTTGATTCGGAGCAAGGCGCATCACATTTTGCGGCGGTTCATAAGGTTTTCGGTGCTAGTAATGTTTCGAAATTGCTACAAAATGTTCCGGTGCACAAGCGGCTTGATGCGGTTGTCACCATTTGTTATGAAGCTCAAGCAAGGTTGAGAGATCCTGTTTATGGTTGTGTTGCTCATATCTTTACTCTTCAGCAACAGGTGATGAGTTTACAAGCAGAACTCTCCTATTTACAAGGCCACCTAGCCACATATGAGGTACCTCAACCACCACCGCCATCTCCACCACAATCACTTCCAATGGTCTCACTAGCCAACCTTCCATTAGTCTCTTCTTCATCCATCCCACCCACATATGACTTGTCTTCACTTTTTGATCCTATGGCCCAAAATCCTTCATGGGCCATGCATGAAAGGCCCAATGAGCCCCATCAATTTTTGGGTAGTGGCACATCAACAAGTAGtaatagtggtggtggtgatCTTCAATCATTGGCAAGAGAGCTTTTGCATAGATATGGATCTGCTCCTTCTTCTCAATCTCATTCCAAATGA 684 0.443 MSINSGCSGSGCDGSGGSGGTCGPCGACKFLRRKCIPGCIFAPYFDSEQGASHFAAVHKVFGASNVSKLLQNVPVHKRLDAVVTICYEAQARLRDPVYGCVAHIFTLQQQVMSLQAELSYLQGHLATYEVPQPPPPSPPQSLPMVSLANLPLVSSSSIPPTYDLSSLFDPMAQNPSWAMHERPNEPHQFLGSGTSTSSNSGGGDLQSLARELLHRYGSAPSSQSHSK 227
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu08g01269 227 MobiDBLite consensus disorder prediction 175 227 - -
Tsu08g01269 227 ProSiteProfiles LOB domain profile. 23 125 IPR004883 -
Tsu08g01269 227 PANTHER LOB DOMAIN-CONTAINING PROTEIN 18 4 218 - -
Tsu08g01269 227 Pfam Lateral organ boundaries (LOB) domain 24 122 IPR004883 -
Tsu08g01269 227 MobiDBLite consensus disorder prediction 188 205 - -
Tsu08g01269 227 PANTHER LOB DOMAIN CONTAINING PROTEIN 4 218 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu08g01269 Tsu-Chr8 14221204 14228252 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu08g01269 27 214 AS2 family AT4G00220 64.583 7.24e-77 229
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Tsu08g01269 LOB 3.3e-39 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu08g01269 K21994 - gmx:100798425 295.819