Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu08g01263 ATGGATCAAGTATCAGCACAAGGTCGTCCTCTTCCTTTTCTCACTAgagatcttcatcttcatcctcatcatcaattccacaCCAACCACCAAACCAATGAAGAAGAACAACAAAGTGGCAATGGCAACTTAAGCAGAGGCCAAAAAAGAGAACGAAACAACAACGACGATACTCCCACCGGAGGAGAAGGAAAAGACGATGGTGGTAGCGGAAGTGCGGGAGGAGGTAGTGGTGGTGAGATGGGAAGAAGACCAAGAGGAAGACCAGCAGGTTCGAAAAACAAACCGAAACCCCCCATTATTATCACGCGAGACAGTGCAAACGCACTCCGATCCCACGTTATGGAGGTCGCAAATGGATGTGACATCATGGAAAGTGTGACGGTCTTTGCACGGAGGAGACAGCGGGGTGTCTGTATCCTCAGTGGAAGTGGGACCGTCACAAACGTGACTCTCCGTCAACCAGCATCACCTGGTGCGGTAGTCACACTTCACGGAAGATTTGAGATATTATCTTTATCCGGCTCTTTCCTGCCGCCGCCTGCTCCACCAGCGGCGTCAGGATTAGCCATATATCTAGCTGGCGGACAAGGACAAGTCATAGGTGGTAGCGTGGTGGGACCGTTGTTGGCTTCCGGTCCCGTTGTTATCATGGCAGCTTCCTTTGGAAATGCTGCATATGAAAGATTGCCTTTAGAAGACGAAGAAACACCGGTGAATGTGCCGGGGAGTGGAGGGTTAGGATCACCAGGAACTATGGGAACTCCAcagcaacagcagcagcaacaacaacaacttgtgGCAGATCCTAACACTTCATCACTTTTCCATGGAGGAGTTCCTCAAAATCTTCTCAATTCATGCCAATTACCAGCTGAGGGCTATTGGGGTGGAAGTGCTCGTCCTCCATtttaa 915 0.4645 MDQVSAQGRPLPFLTRDLHLHPHHQFHTNHQTNEEEQQSGNGNLSRGQKRERNNNDDTPTGGEGKDDGGSGSAGGGSGGEMGRRPRGRPAGSKNKPKPPIIITRDSANALRSHVMEVANGCDIMESVTVFARRRQRGVCILSGSGTVTNVTLRQPASPGAVVTLHGRFEILSLSGSFLPPPAPPAASGLAIYLAGGQGQVIGGSVVGPLLASGPVVIMAASFGNAAYERLPLEDEETPVNVPGSGGLGSPGTMGTPQQQQQQQQQLVADPNTSSLFHGGVPQNLLNSCQLPAEGYWGGSARPPF 304
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu08g01263 304 MobiDBLite consensus disorder prediction 32 48 - -
Tsu08g01263 304 Gene3D - 110 241 - -
Tsu08g01263 304 MobiDBLite consensus disorder prediction 49 63 - -
Tsu08g01263 304 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 15 6 304 IPR014476 GO:0003680
Tsu08g01263 304 PIRSF ESCAROLA 15 304 IPR014476 GO:0003680
Tsu08g01263 304 Pfam Plants and Prokaryotes Conserved (PCC) domain 111 223 IPR005175 -
Tsu08g01263 304 MobiDBLite consensus disorder prediction 233 280 - -
Tsu08g01263 304 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 18 6 304 - -
Tsu08g01263 304 MobiDBLite consensus disorder prediction 26 101 - -
Tsu08g01263 304 MobiDBLite consensus disorder prediction 250 280 - -
Tsu08g01263 304 CDD DUF296 111 222 IPR005175 -
Tsu08g01263 304 SUPERFAMILY AF0104/ALDC/Ptd012-like 107 242 - -
Tsu08g01263 304 ProSiteProfiles PPC domain profile profile. 107 245 IPR005175 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu08g01263 Tsu-Chr8 14138450 14139364 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu08g01263 1 304 AT-hook Motif Nuclear Localized (AHL) Family AT2G45430 63.777 5.75e-88 264
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu08g01263 - - gmx:100816243 410.223