Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu08g01243 ATGGCTACCAAGGTCACAAAATGGAAGAGATTCGATGGGCGAATCATCCCCACAACTTGTTATTATTGGTTGAACGGAAAGTGCAACCGAAATCCATGTAGGTTTCTTCACAGCCAACCTTCGTCGCCTTCTGCAGCTTATGTAAATTGTAATGGAAGGAAGCGATGTTCTGATTCTGAAAATTCTCTTCCTAAGCGTAAACTAAAGGTGGCGGTTTGGAATAGGAAGACAGAAGTTGTCGAGGCTGCTCAAAATTCATCACCTACTTTATCGACAGAAGTTGTCGAGGCTGCTCAGAGTTCATCGCCTACTTTATCGACAGAAGTTGTTGAGGCTGCTCAGAGTTTATCGCCTACTTTATCGATAGAAGTTGTCGAGGCATCTCAGAGTTCATCGCCTACTTTATCGAAAGAAGTTGTCGAAGCTGCTCAGGGCTCATCACCTACTTTATCGACAGAAGTTGTGGAAGCTGCTCAGGGTTCATCCCCTACTTTATCGACAGAAGTTGTCGAGGCTGCTCAGAGTTCATTACCTACTTTATGCAAATATTGGATCAAAGGAAACTGTGCGCACGGAGATAAATGTCTGGATATACATTCTTGGTTTTCTGGTGATCGTTTATCCGCAGTAACAAATCTTGAAGGACACAAGAAACTTGTCACTGGAATTACACTTCCAATTGGGACGAACAAACTTTGCTCTGGAAGTACTGATGGCACAGTTCGGATATGGGACTGTGATAGTGGTCAGTGTGCTAATGTGATGAATCTTAGTGCTGAAGTCAACTCTTTGATCAGCGAGGGCCCTTGGATTTTTATTGGTCTATCAAATATTGTCAAGGCATGGAATATTCAGACTGGTTCACAGTATACTCTTGATGGACCTAACGGGCGAGTCCTTGCCATGACTGTTGGCAACGATACACTTTTTGCTGGTGCAGAGGATGGTGTAATTTCTGCATGGAGGGGTAGCTCCGAAGCCAATTCCCCTTTTAAACTGGTTGCGTCACTACGTGGCCACGCTAAACCTGTTGTTTGCGTTACTGTTGGATGCCTCGACAAGAGGCTTTTCTCGGGATCCATGGACCACAGCATCAAGGTTTGGGATCTTGACACATTTGAGTGTAAAATGACACTCAATGGGCATACTGACACAATCACATCCCTTATTTGTTGGGGAAACTTCTTACTATCAAGTTCATTTGACTGCACTATTAAGGTCTGGGCTGAAAGTGAAGAGAAAACTTTCCATGTGGCATATTCGCACAATGTGGAAAACGGCATTGTTGCACTTAATCAGATGACTGATGCAGAAGATACACATATACTGTTTTGCTCTTGCCGAGACAATTCAGTTCGTCTCTATGAACTACCATCTTTTTCAGAGAGGGGTAGACTGTTTGCTAGACAAGAAGTCAGATCAATCGAGAAAGGTCCTGGCGGACTCATCTTCACTGGAGATGGAACTGGTTTGGTGACTGTCTCAAAATGGTCGGAAGAATCCAACAAGGTAGAAGcagcatag 1524 0.437 MATKVTKWKRFDGRIIPTTCYYWLNGKCNRNPCRFLHSQPSSPSAAYVNCNGRKRCSDSENSLPKRKLKVAVWNRKTEVVEAAQNSSPTLSTEVVEAAQSSSPTLSTEVVEAAQSLSPTLSIEVVEASQSSSPTLSKEVVEAAQGSSPTLSTEVVEAAQGSSPTLSTEVVEAAQSSLPTLCKYWIKGNCAHGDKCLDIHSWFSGDRLSAVTNLEGHKKLVTGITLPIGTNKLCSGSTDGTVRIWDCDSGQCANVMNLSAEVNSLISEGPWIFIGLSNIVKAWNIQTGSQYTLDGPNGRVLAMTVGNDTLFAGAEDGVISAWRGSSEANSPFKLVASLRGHAKPVVCVTVGCLDKRLFSGSMDHSIKVWDLDTFECKMTLNGHTDTITSLICWGNFLLSSSFDCTIKVWAESEEKTFHVAYSHNVENGIVALNQMTDAEDTHILFCSCRDNSVRLYELPSFSERGRLFARQEVRSIEKGPGGLIFTGDGTGLVTVSKWSEESNKVEAA 507
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu08g01243 507 Gene3D - 337 506 IPR015943 GO:0005515
Tsu08g01243 507 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 48-LIKE ISOFORM X1 13 503 - -
Tsu08g01243 507 ProSiteProfiles Zinc finger C3H1-type profile. 19 40 IPR000571 GO:0046872
Tsu08g01243 507 SUPERFAMILY WD40 repeat-like 209 498 IPR036322 GO:0005515
Tsu08g01243 507 ProSitePatterns Trp-Asp (WD) repeats signature. 356 370 IPR019775 -
Tsu08g01243 507 SMART WD40_4 372 409 IPR001680 GO:0005515
Tsu08g01243 507 SMART WD40_4 206 245 IPR001680 GO:0005515
Tsu08g01243 507 SMART WD40_4 330 369 IPR001680 GO:0005515
Tsu08g01243 507 SMART WD40_4 285 322 IPR001680 GO:0005515
Tsu08g01243 507 SMART WD40_4 412 456 IPR001680 GO:0005515
Tsu08g01243 507 SMART c3hfinal6 175 201 IPR000571 GO:0046872
Tsu08g01243 507 SMART c3hfinal6 14 39 IPR000571 GO:0046872
Tsu08g01243 507 SUPERFAMILY CCCH zinc finger 179 200 IPR036855 GO:0046872
Tsu08g01243 507 ProSiteProfiles Trp-Asp (WD) repeats profile. 337 378 IPR001680 GO:0005515
Tsu08g01243 507 Pfam WD domain, G-beta repeat 374 408 IPR001680 GO:0005515
Tsu08g01243 507 Pfam WD domain, G-beta repeat 210 245 IPR001680 GO:0005515
Tsu08g01243 507 Pfam WD domain, G-beta repeat 332 369 IPR001680 GO:0005515
Tsu08g01243 507 ProSiteProfiles Trp-Asp (WD) repeats profile. 379 418 IPR001680 GO:0005515
Tsu08g01243 507 ProSiteProfiles Trp-Asp (WD) repeats profile. 213 254 IPR001680 GO:0005515
Tsu08g01243 507 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 213 245 - -
Tsu08g01243 507 PANTHER - 13 503 IPR044715 -
Tsu08g01243 507 Gene3D - 189 335 IPR015943 GO:0005515
Tsu08g01243 507 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 337 372 - -
Tsu08g01243 507 PRINTS G protein beta WD-40 repeat signature 396 410 IPR020472 -
Tsu08g01243 507 PRINTS G protein beta WD-40 repeat signature 232 246 IPR020472 -
Tsu08g01243 507 PRINTS G protein beta WD-40 repeat signature 356 370 IPR020472 -
Tsu08g01243 507 ProSiteProfiles Zinc finger C3H1-type profile. 175 202 IPR000571 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu08g01243 Tsu-Chr8 13861218 13863477 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu08g01243 213 456 Acyl Lipid Metabolism Gene Families AT3G18860 25.000 4.37e-12 66.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Tsu08g01243 WD40 1.4e-05 CL0186
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu08g01243 - - mtr:MTR_8g028700 504.212