Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu08g01234 ATGCTAAGAAGTGATCGAGGCAAAGAGTACAACTCCCACGAGTTTGATAAATTCTGTGAGGATGAAGGCATTGAACGACAACTAACAGTTGCGTAttctccacaacaaaatggtgtgtCGGAGAGGAAGAATCGCACAATCATGGAGATAGCAAGATCAATGATGAAGGATAAAGGATTGCCAAATATTTTTTGGGCAGAAGCAGTTTACACTGCTGTTTACATACTCAACATGTGCCCAACTAAGGCAGTTCAAGACAAGACTCCTATTGAGACTTGGTGTGGCAAAAAGCCATCAGCTAAACACCTAAGAGTTTTTGGATCTATCTGCTATATACATATTCCTAAACAAAAACGACACAAACTAGAAGACAAGACCACTAAAGGTATCTTCTTGGGATATAGTACACAATCCAAAGGCTACAGAATCTATAACTTGCAAACAAAGAAGCTCGATGTCAGTCGAGATGTTGAGGTTGACGAAAATGCTAGTTGGAATTGGGATGAAGAAAAAGTCGAGAGAAGAAATATTTCCATCCCAATACCACAATCAGACATAGAGGATATGGAAGAAGCAATAGAAGAACCAGGTACGCCACCTTCAACTCCTCAACAAGAAATTTCTTCACCAGAATCTACTCCAACAAGAGTAAGATCATTGGTGGATATATATGAAACTTGCAACTTTTCCATGGCTGAATCTAAAAGCGAAGTGGCGATGGAATCCTTGAATGCACGATTCTTCGTGTTTCAAGTTATAATTTCGATTATTGCTATCTCTCACATAGTGGCTAGTGCCAGTGATGGAGGTATGCAACCaaatgtcatagtggctaaggATGGCAGTGGCCAATATACCACGGTCACTGACGCCATCAACTCATATCCAACAAATTATCAAGGTGATGGTCCTACCAACACCATTATCACCGGAAGAAAGAACAGTAAGGATGGACTCCCAATGCCGCTAACTGCCACATTCACCACCTTTGCTAAAAATTTTACTGCCAAGTCCATTACATTTGAGAATACTGCTGGTCCCGAAGGTCAACAAGCAGTAGCCCTCCGCGTTGTAGGTCGCTACTCAGCATTTTTTGATTGCGCATTTCGCGGTCATCAAGATACATTGTATGTAGACCGGGGATTTCAGTTCTACCGCAACTGTGAGATATATGGAACAATTGATTTCATATATGGTCACTCCAGTACCTTAATCCAGAATTCGAAGATTTTGGTGAGAAAGCCCCTTGAAGGGCAAAGCAATGTTGTGGTGGCAGATGGCACCGACCAATACAACAGATTCAGAACTGGTATAGTGCTGCAAAACTGCTCTATCATGCCAGACGTTGACCTCAAGCCTCATCTGCAAACCGTCAAAACGTACTTAGCAAGACCGTGGAAGCAATTTTCAACGGCAGTCTTCCTTGAAAACTATATTGCTAATTTTGTTCAAAGAGATGGGTATCTAATTTGGACAAAAGAGCAACCAAATATTGAACACCCCTACTTTGCTGAGTTTGGCAACACTGGACCTGGTGCTAATGCTACCGCAAGAGTCTATTGGGCCAAAGGTCTAATCAGCAAGATGGCTGCTTCTATATTCACAGCGGAACGGTTCATTCATGCTAGCACTTGGTTGCCCGCCACCGGAATTCCCTATGATCATGGCTTTACATCAACTTAA 1683 0.4118 MLRSDRGKEYNSHEFDKFCEDEGIERQLTVAYSPQQNGVSERKNRTIMEIARSMMKDKGLPNIFWAEAVYTAVYILNMCPTKAVQDKTPIETWCGKKPSAKHLRVFGSICYIHIPKQKRHKLEDKTTKGIFLGYSTQSKGYRIYNLQTKKLDVSRDVEVDENASWNWDEEKVERRNISIPIPQSDIEDMEEAIEEPGTPPSTPQQEISSPESTPTRVRSLVDIYETCNFSMAESKSEVAMESLNARFFVFQVIISIIAISHIVASASDGGMQPNVIVAKDGSGQYTTVTDAINSYPTNYQGDGPTNTIITGRKNSKDGLPMPLTATFTTFAKNFTAKSITFENTAGPEGQQAVALRVVGRYSAFFDCAFRGHQDTLYVDRGFQFYRNCEIYGTIDFIYGHSSTLIQNSKILVRKPLEGQSNVVVADGTDQYNRFRTGIVLQNCSIMPDVDLKPHLQTVKTYLARPWKQFSTAVFLENYIANFVQRDGYLIWTKEQPNIEHPYFAEFGNTGPGANATARVYWAKGLISKMAASIFTAERFIHASTWLPATGIPYDHGFTST 560
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu08g01234 560 Gene3D - 268 557 IPR012334 -
Tsu08g01234 560 Gene3D - 1 125 IPR036397 GO:0003676
Tsu08g01234 560 PANTHER PECTINESTERASE 301 557 - -
Tsu08g01234 560 PANTHER PECTINESTERASE 268 301 - -
Tsu08g01234 560 SUPERFAMILY Ribonuclease H-like 2 99 IPR012337 -
Tsu08g01234 560 Pfam Pectinesterase 300 542 IPR000070 GO:0030599|GO:0042545
Tsu08g01234 560 SUPERFAMILY Pectin lyase-like 272 555 IPR011050 -
Tsu08g01234 560 MobiDBLite consensus disorder prediction 191 215 - -
Tsu08g01234 560 ProSiteProfiles Integrase catalytic domain profile. 1 97 IPR001584 GO:0015074
Tsu08g01234 560 MobiDBLite consensus disorder prediction 198 215 - -
Tsu08g01234 560 PANTHER PECTINESTERASE 301 557 - -
Tsu08g01234 560 PANTHER PECTINESTERASE 268 301 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu08g01234 Tsu-Chr8 13749878 13752782 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu08g01234 185 557 Carbohydrate Esterase AT2G47030 35.484 1.28e-71 238
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu08g01234 K01051 - gmx:100808559 358.992